DreINT0100009 @ danRer10
Intron Retention
Gene
ENSDARG00000001014 | myh9b
Description
myosin, heavy chain 9b, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-998]
Coordinates
chr3:5229561-5231019:-
Coord C1 exon
chr3:5230875-5231019
Coord A exon
chr3:5229768-5230874
Coord C2 exon
chr3:5229561-5229767
Length
1107 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
CGTGGTGTGTTTCCCCTCAGAAT
3' ss Score
10.59
Exon sequences
Seq C1 exon
GACGAAGCGTGAGACTGAAGTGGCGCAGCTGAAGAAGGCTCTGGAGGAAGATGCTAAAGTTCACGAGCAGGTGATGGCGGAGATCAGACAGAAGCACAGCCAGGCCTTCGATGAGCTCAACGAGCAGCTGGAGCAGGTCAAACGG
Seq A exon
GTAAGAGACACACACACACACAAATAGACAATCACACACACAAATAATCACACATATAAACAGACAAACACACATATAAGCACACAAATAAACACACAAATAAACACAGAATCACACACTAAAAAACACAAATAAACACACACAAACACACAATCACACACAAATATATAAACACACACTAATAAACACGATCACACACAAATAAGCAAACATACACACACAAATATATAAACACACACTAATAAACACAATCACACACAAATAGACAATCACACACAACTAAACGCACAAATAGATACACAAACACGCACAAATAGACATTTAAACACAACTAAAACTTAAATAAACATGCACACAAAGACAATCACACACAATTAAACACACAAATAGATACACAAACACACACAAATAGACAATCACACACAACTAAACACACAAATAAACACGCACACACACAAATAGACAATCATACACAACAAAACGCACACATAAACACGCACCCACACACAAATAGACAGTCACACACATCTAAATAAACACGCGCACACACACACACAAATATACAAACACACACAAATAGACAATCACACACAACTAAACACGCACACACACAAATAGACAATCATACACAACAAAACGCACACATAAACACGCACCCACACACAAATAGACAGTCACACACATCTAAATAAAAACGCGCACACACACACACAAATATACAAACACACACTAATAGACACACAATCACACACAAATAAACACACATACAGACCCAAATATACAAACACACACTAATAAACACACAATCACACACAACTAAACAAACTCAAATAAACACACACATAAATAGACAATCACACACAAACACACACAAATAGACAATTATACACAAGCAAACACACAAATAAACACGCACACACACTAATAGACAATCACACACAACTAAACACACAAATAGACACACAAACACACACAAATAGACAATCACACACAACTAAACACACAATTAGATACACAAACACACACAACTAAACACAAACACACAAATAAACACATAAACACACACCCCATCATGATGATCACAATGCGTGGTGTGTTTCCCCTCAG
Seq C2 exon
AATAAGGTGTCGGTGGAGAAGAGTAAGCAGGCTCTGGAGTCTGAGAGGAACGAGCTGCAGATCGAGCTGCAGACGCTGATGCAGGGGAAAGGAGAGTCTGAGCACCGCAGGAAGAAGGCGGAGGCGCAGCTGCAGGAGCTGCAGGTCAAACACACCGAGAGCGAACGCCAGCGCATCGAGCTCGCCGAGAGACTCACCAAGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001014:ENSDART00000137105:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=NA C2=0.957
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGCGTGAGACTGAAGTGG
R:
CATCTTGGTGAGTCTCTCGGC
Band lengths:
347-1454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]