DreINT0100018 @ danRer10
Intron Retention
Gene
ENSDARG00000001014 | myh9b
Description
myosin, heavy chain 9b, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-998]
Coordinates
chr3:5268981-5270084:-
Coord C1 exon
chr3:5270057-5270084
Coord A exon
chr3:5269079-5270056
Coord C2 exon
chr3:5268981-5269078
Length
978 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TTTTGTGTGTGTTTTTTCAGAGG
3' ss Score
10.48
Exon sequences
Seq C1 exon
ACCGTGAGGACCAATCGATTCTCTGCAC
Seq A exon
GTGAGTCACATGATCCAGCATGTGTGATAAAATAAGGCTGTGATCCATTTCTGAAGCTTATTTGAGTGTTTGTGTAAATGCATGTTATGTTTGTCTATTTGTGTTTGTGTTTGTTGTTTTTTTGTCATTATGTCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTATTTTATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTAATATACATATACTTTATCTATATATATAGGCACATATATTATACACTTGTGTGTGTGTAGCATATATATATATATATATATATATATATTTAGATATATATATATATATATATATATATATATATATATATATATATATATATTATGTATATATAGGCACATATATAGCTTGTATATAGGCACATATATTATACACTTGTGAGTGTGTGTAGCATATATATATATATATATATATATATATATAGGCACATATATCATATACATACACGTGCGTGCGTGCGTGTGTGTGTGTCTGGTTATGTGTTTTTTGTGTTTTGTTTGTTTGTCAGTGTTTCTGTGTGTTTTGTGCATGTTTGTGTGTGTTTATATAAATGTGCGTTTGTGTGTGTTTTGACTATATACTGTGTAGAAATGCGTTTTATGCATGAATGTCTGTTTTGTGTGTGTTTATTTATTCGTGTGTGGTTGTCTGTGTCTTTGTGTGTGTGTTTTGCATTTTGTTTGTTTGTGCATGTGTGTTTCTGTGTGTTTTGTGCATGTTTGTGTGTGCTTATATAAATATGTGGGGTTTTTTTTGTCTATGCATATTTGTGTGTGCGTGCATGCCTGCTTTTATATATGTATTTGGTATTTATTTTGTGTGTGTGTTTCTGTGTGCGTGCATGTCTTTTTGTGTCTGTATATCTATATATGATTTTGTGTGTGTTTTTTCAG
Seq C2 exon
AGGTGAATCTGGAGCTGGAAAGACAGAAAACACCAAGAAGGTCATTCAGTATCTGGCTCACGTGGCGTCATCTCACAAAACCAAGAAAGACCAGGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001014:ENSDART00000137105:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.187
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]