DreINT0100263 @ danRer10
Intron Retention
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42793743-42795066:-
Coord C1 exon
chr2:42794974-42795066
Coord A exon
chr2:42793812-42794973
Coord C2 exon
chr2:42793743-42793811
Length
1162 bp
Sequences
Splice sites
5' ss Seq
TCTGTACGT
5' ss Score
4.47
3' ss Seq
TTCTCTCTTCGTTTCATCAGAGA
3' ss Score
8.27
Exon sequences
Seq C1 exon
AAGTTGGGTTTGCTCGCTCTTGTGAATGAGGAAAGTCATTTTCCTAAAGGCACTGATGGCACACTTCTAGAGAAACTCCACAGCCAACATTCT
Seq A exon
GTACGTCACATACATCGTGCATCAGTCATATTTTATCATTTTATTCAGAAATAATGAATAATAGACTACTGGTGGCTCTAAATAATAATAAAAAGCATTATGAATATGCATTTAGGTTCACCTCACTACACAGCAAATGTATAATGCCTTATAATTGTATTTGGAAAAAATAGGATTGAAAATTCCCTCATCATTTACTCACACTGAAGTGATTGTAAATGTTTATTTAATCATTTTATTCTGTTGAACACAAAATAAGATATTCCAAAGAATATTGGAAAAAATCAGCTATTGACATCCATAGTTTTCCCCTAGTATTTTTCAGCAAATCTTCCGTATTCAAGAGAAGATAGAAACTCAAACAGGTTTTGAACAAATGGAGGATGAGTAAACAAAATATTGGGTGAACTATACTTTTAATGTATGCATTGTAACGAGGGATGTGACACTGACAACAGGGCTGAAGGTCCAAATGAAGGTTTATTAGTATGGTTAGGCAAGCAGTTATCCAGAGTCGTAGTCAAAAAAACAGGCAGATGATCACAAGGCAGGCAGCAAACAGGATTAAACAAATAAACAAGGCGAGGATCAAAAACACGGAAAAACAAGACAAAGGAAAACGCGTTGTGGTGTCACTAAAACAGTAGACAAGACTCAGCCATGAGTGTCTCAAAGTGAGCTGTATATATGTGTGTGTAATCAGTACTTGAGCAGCATCAGCTGTGTGTTTGCAATCAGTCAGGATCAGGAACCGGTTGTGTGTGTATTGCATGACTGGGATCTGTAGTCCATAACATGGCAGATTTGTAGTTTGTGTGAATGTTTTACGTTTAGCAGGGTTCAAAACAGAAGAATGAATAAAATGCAATGCAAATAAACAGAAAACAGTGTTGTTCGTTCTTAATAACATTTATATTTAATATTAGTTTTTGAGAATTGTGATGTAAAAAGTTCATGTTTTACTCTCAGTTGTCACCATTCCAAATGTCCAATTTACATTTTATCATTAGTTTGAGATGATAAATAAAACAACAACTTATAATTAAGCCCAACAAATGTTTAAGAATAAAAAGCCTATCACTGATATGTATTTTGGGCATAAATAATGACCTTGAGCATGGAAACTACAGTCACTGATCTGTTTCTCTCTTCGTTTCATCAG
Seq C2 exon
AGAAATCAGTTCTACATCAAACCTCGAGTTGCAGTTCATCAGTTTGGAATCAAGCACTACGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004:ENSDART00000140159:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]