DreINT0100761 @ danRer10
Intron Retention
Gene
ENSDARG00000010186 | myo3a
Description
myosin IIIA [Source:ZFIN;Acc:ZDB-GENE-041026-4]
Coordinates
chr24:6189168-6190263:-
Coord C1 exon
chr24:6190228-6190263
Coord A exon
chr24:6189268-6190227
Coord C2 exon
chr24:6189168-6189267
Length
960 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CCATACTCTTTGTGTTGCAGGCA
3' ss Score
9.13
Exon sequences
Seq C1 exon
CCTTCTCGGAAAATCTGACAGGGACAGTGACTCCAG
Seq A exon
GTACAGACAGTGACTGTCTCGTGGACTGAATGTAGTGTCTACTTCCTGTGGATGTAGTAGCAGCAGCTTCCTGAGTCTTGTGTTGTGGCATCTATTATTGCTTTCCTAAACTGTTCATTGTGTACCCAATGGTCTGTTCTTGTGTTTTAACCAGACATGTCTTTAGGAAACTCATTTTAGCAGCTAGTACATTAGCATCATTTAGCATATGTGCTCAAATCTTCTGCTTATTGGCTCTGGAATTTCAAAAAAAAAAAAAAAACACTCCGCAAGAACAATAATAAAAAATATGGTCCCACTTTACCTTAGGTGGCCTTAACTAATATGTACTTACACTGAAATAATCATTTGTTACAATGTACTTCTTGTGTTTTTACATTGTACTAGGATTGATTAAATACATGCATGCAATTACATCTGTAATTAATGTCTGTAACTTTATTTGTAATTACACTGTTAACCATTACACTTAAACCTACCCATACCACCAATACATTGTGAACACAGTAAGTACATTGTGTTTATGTTTGATACAAGTTCATAGTAACTAAGACCACCTAATATAAAGTGGGACCAAAAAAATAAACAAACAAACAGTAGATCCGTGTACTGTATAAAATAATAACTCATGTATAATAATAACAGTTAACTATATAAAACACAACATTTTTTTTCGTAGTGCTATAACAATCAAGGGAATTTATTCATAATTATGCTGTATAGATTCTGAGACAACAATAATAACCTTGAAAAACATAGAGATTTAAATTAGACACAGTGCTTTTCAAATGACTTTGTACAAAACGAAAGCAATTTTCTCACATAACTATTGATTTTTATTTCATCATTATCTTTAATGACTTTATCAATAACTCCACCAAGGTAATCTGAATGAGAAAGTAATGTGATTTTTAACTTTCACGGTTGCTTTTTCCAAAGCCCATACTCTTTGTGTTGCAG
Seq C2 exon
GCATGAGCGTATCCACACCAAGAAAAACAGCTACATGAAGTCTCAAAGTCAAACGTGTGACGACGCTGATGATCTGGCAACCCTAGAGGTTCTAGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010186:ENSDART00000136041:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.821 A=NA C2=0.529
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006316=Myosin_head=PU(1.5=32.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]