GgaINT0103346 @ galGal3
Intron Retention
Gene
ENSGALG00000007647 | MYO3A
Description
NA
Coordinates
chr2:16260685-16270428:-
Coord C1 exon
chr2:16270273-16270428
Coord A exon
chr2:16260785-16270272
Coord C2 exon
chr2:16260685-16260784
Length
9488 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTTTATTCTGTCTTTTCTAGATT
3' ss Score
12.49
Exon sequences
Seq C1 exon
GTGCTTAACTAAAGACTATGAGAAGCGCCCAACAGTGTCTAGTCTTTTGCAGCATGATTTTATTAAGCAGATTGAAGGAAAGGAAAACGTGCTACAAAGACAACTTATGGAATTTATTGATGTTCATCAACAAATGGGAGTCACTGAAAAGGCAAG
Seq A exon
GTAAAAATAGCTAAAAGTAGACCAGTTGTGGCAGTCTTTATACTTGCACTGTTTCTGAATGGCTGGTGCTCAGAAAAGGATTCACCTCTCATAACTTTAGCTGACTGAAAAATACAGTGTTTAATCTTTGACTTCCTCCTATAAAACCAATAGAAAGTGAAGGGCATCGTGATTCACATGAGATGGGGCAATCTTTAAAAGTCTCTCCCCTTTTTCCTCTGATTCTACGTGCAGATTAAGGTCCCAGCTTTCAGAATACTAAAGGTTGGGTGAGATGAGGGTTTATAATTCACTTACATTTCCATGGTTATTATTGACTGGAGATGCTAGAAGTAACTGATCAGGTTCCTGCAAGAACTGGATGCTACTGACTGAAAACAGTAATAGTGGCAGACTTTGCAAAATTGAAAATTTTTTATAAAAAAAAGCCTATGTCTTATCAAAAGATCCTTTTTTTCTTCCATTAGTATTTAAAAGTATTGTTTCTGCATAACTCATGTAGCACTTGATGGCTTTTATTTAAAACAACTGAAAATGGTTTGGTTCAATACAGCAATTTATTTTAAAAAAAATCCACTACACTGAAGTAATGTGTCAGTTGTGAAACGTAGTAGAAGATTAGTATTGATGTACTGCTTGTGCAGTGTCTCCTGTGCATCAAGGTAAAGGACGATAGGCATTTTTTAAATGGAACATAAAATGTAAAAGGCATTTTGTACTACATGGAAAACACTTATTAAAGTGTGCCACATTTACTTTTGCACATATTTATAGTACCAACATGTATAGCAGTCCTCAGTTCTGATCCGGGAGAATTTTTGGATATAAACCGTCGTTTATGGACGATAAGAATAATTTTTTATTTTCAAGTTTTCTTGGACTGTCTGAAATTGGACGTAGAATGAGTAGCAGTTTCTCTTTTTTGGCATTTCTATGAACGGCTATGCCCTTGGTTAAATTTAAGACTCACTCTGAATTTATATGCTCTCTATGGCACTTACTTAGAATTGACTTAATCCAGAAAGACTCTGGAATTGAACTAAGCTCCTTAGATGTCAGTGCTGAGCATTTGGACAATACTCCAGACTTAAAAATAATAACAAAAATATAAAACTCAGGATAATTGTGTTAAAATAAATCAAAATTTCTAACCAGTGTGAATTTATATTTTTATAAAACTTGTGACAGTGGTCCTTTCAATGGCTAAATCATTTCTGAAAATAAAGCTTCAAAGTCAGTTATGTATTGTAAGTATTTTCTCAATTTTATATAACTTATATGTTTTCTAGCAAGTCCTTCTGTTTTTCAAAATTCTTCATTTTTTTAAAAGTAATTACTTTATAATGCAGATGACATGAGCTTTCTTCTCCCATGCAATGCAAACATAAAGAAAATGGCTCAAATTTGCTTGCACATAGAGCTACCAAATGGCACAGGAAGAGGAAAGTATTAACACTTTCTCCGTCCAATTATATTGTGGTTTTTGAACTGACTGCTCTTCATATGAACCAGATTTTAAAGGAACGTATTACATGATGAAGTTACCTAGCCTTTGCAGTTGATCAGGTGCAATTTCTGAAGCAGTGTTCCCCAAGTGTGTGTCACAGTGGTGTGACAGCTGTGCATGACCATCTGGAAAGTGGCTTGTCTTTCATGCCACTGTTACCACTGCTGAAACGCACCACCCACTGCCTCGCTGTGCTCACATCCACTGCTTGGTCTCCATAAATATTCAGAAAGCATCAATGAGTGCCAATGGGTGCAGTTTTTTCCTCATGGAGGAATTCAGTTCCACAGCTTTGCTGCATATGCACTTCCATGTCAGACACCATTTTGTCAGACTGCCCCTCTGCTGCTGTCACACAATAAAAAAATGTCATGGAACGTTGGCAGGAAGGTTCAGCTTCTACTACCATACCACCAATATCCAACTCTGATGCCATGGGCCAATATAATAAAACGAGAGTCATTACTTTTGGAACAGTCTTCATATAGAAAAGATAAGCCACTTCCCAAAGACAATAAGAATACCTGTTATATTATGTATTGTTATCTCTGTGTAAGCAAGAAAAGCTACAACTGTAGTATGTGCATCATTTCAATTTATAAAAAAATAGAATTTCAGGCATATAAAGGATGTTGATATAGAATGACATTTTTTTCTTCCATTGAACAGTGAAAAAGATGATACAAAAATATTTTAATTGGGTTGTTTTACTTTTTTTGAAAGTCTTTAAAAACAAATCAGATATATCTTCTGACCTTTGGTTTGCCAGAGCAAATAGTATCAGCAGAATCTACACAGAAGTGTCATGTAGGGCAATGAAGCTGGTGAAGGATCTGGGACACAAGTCTTAAGAAGAGTGGCTAAGGGAACTGGGAATGTTTACTGTGGAGAAGAGGAGGCTCTAGCAAGACCTTATTGCTCTCTACAGCTCTCTATGTAAAAGGAGGTTGTGTTGAGGTGGGTGCTCAGTCCTCAGGTAACTAGCAAGAGGACGAGAGGTAATGGCTTCAACAGAGGAGGTTCAGGTTGGATATCAGGAAAAAATTCTTCTCTGAAAGAGTGGCTAAGCATTAGAAAAGGCTGTCCAGAGAGGTGGTGGAGTCACCGTCCCTGGAGGTATTCAAGAAATGTATAGATGTGGCACTGAGGAACATGGTTTAGTAGGTGCTGATGGGTTGACGGTTGGACTTAATGAACTTAGTGGTCTTTTGCAACCTTAATGATTTTATGATGCTATGTAAATCTGATTCAGTCATGATATAGGCTGTGGCATGACTGGTCAATTGAAGAGTTTCATCTTAAAATCACCTGGCTTTCTTTATTATTCTATCCTGGGACAGTTTTTACACTGATGTGTTAAGACCCTGTTGTGGAATTCCTGAACTTTCACCTGTTTCAACAGCTTCTCTTGTAAAGCTCCCTCCTGATCTCCAGCTGTTCAGTTCATAACTCCAAGGCCCCCTTCAAATCTCCAGCTGGCTGTCACTGGGAGGCAGTATTTTAAGGGATTAAAGAACCTTTCCTAATGCTGAGTGATGAAATCCTCCTGTGTGCTGTATGAGTTCACTGTGTATACTGAAGAAATTTGGTAGTGCAGACTTGAAAGTAAGGAATCCAGTTGTTTTCTTGATATGTTTATTTTCCTGTTCAAATTATACTTTATGAATAAAGAAAAATATATTTCAGAAGAGTAAGTACCTGAAAGTTGATAGCTGAGGTCCAGCCCCTGGGTCTTCATGTGTCCACTATTTTTGTTTTCACCCAACATCAAATCACTGTTTTTGTCCATTATGCTGAGGTGTAATTTGGATCTGACTGCCCTCTGCAGTGGTAATCTGTTGTGGTTATGATATCGCTTTGTTGCTTGCTAAATGTGTAGTTTTTATAGTTCAGAAAGAAGGCATCATGTTAGGTCGTATTCTCAGTGGGTTTATTTTTGCAGAAGGACAGATCATAAGGCGTAGTATTTCTGTACCCTGTCTGCTCAGAAAGGGTTTGTGATCTCTAGACTGAAGGTGGAGCCACCCTATAGCAACTCCCTCTACCACTGTTGTATCTGAGGTATTTTCTAATGTTGACCAGCCACCGAGGCATTAGGGCATTGCACCAGGCTGTTTGAACTTTCCCATTATTATTGCTGCTAGTCCAGCAAAGAGAGACCTGGTTTTAGATAACTGTGTTGCATCCTTACCAAGCACCTGACAAAGGAAACACACCACAGAAAGTAAGACAGATTCTGTCATGGAGAAACAGTAAGCTCATCTGAGCCTGATGACCTTTGGGCGCTCCTTAAGTTTCCCCTTGATTTTAGCCAATCTCTCAGTCACACTTTCTTGTCTGTCAGATTATAGATATTAAAATTTATAATTACTGATCAAAATAATGATTAGAAGTGAGTGCTACAGCATATACCAAAGAACTGTTCTAAAAATACACTTCTCACCAGGCTGAATGAGGGGAAAAAGCCCTGCATTGTAAAGAGTTTTACTTTGCAACAGAAATAGCTGTCTTTGAAATGGCCTTCAGAACTGTCGCATTTACACCTGACTGTCAGGCTTGCAATACTTTCATCTTGAGTTGTTTGGCTGTCTTATTCTTGACTGCTTTTACAATAATCTCTGCAGAAATGTGCAGTGATTAGTACAACGTGTATTTCCTGGGAATTATGACTCATTCCAGAATGAGCAGTGTATGCGAGGGATATTCAGTGCACCGAAATTTCAGCAACCAACTCTGCTCCCCAAGTTAAAAGACTTACATGCCCTCTAAATAAATGTGGGAAAGAGACCCATTCTATTGCAGAGTGATTCAGAGCAAGGGCTTTTGCATGAGCTGAATTGCTCTGCTAAGTGTTTGTCCTGCTGAGTTAACCACGTAGGAATAGCACTGCAATTCAAGGTGCTACGTAGATGGTCTGTTTTGGAACTCTTTTGGAACTTCAGGGAGGTGAGTTCATGGAAGTTCACATACAATATGCTCAAAGGGGGTTCTCAATTTATTCACTAGTATTCAGAGCAGTGAGTACCATATAGTTTCCTTTCATGACTTTCTGAGTGACTTCCCAGACTTGTGTCACTTACTTCCTGGGGCTTCTCTCTCTCTTTCCCTGACTCATCCTGCCAGTTGGAGCAGCTGTTAACAACCCTGCAAGCTAAACTCCAAGGGCAGCTTGCAGTGGAGAACAGATCACCACTCCAGCTTGAGGAAAGCAGTAAGAGGAGCTGAGTAACACAGCCCACTCAGTCCAGTACTGATTGGGTCAAGGTGTCCAAATGAAATGTGTGGCAGAGTAGGGATTAATCCTGAGGTTGTTGCCTTGTAGACTAATTCTGGACAACCTCAAGCCACGTCTTCCACTCCTGTAGTTTGTTATAGGCTTTGTTGTACCAGTAGGGTCTGTGTATTCCTGCACTGTTCCTGAGGGTGAGATACGTAACACAGTTATGCTACAAACTCCTCTCAGGCAGTAGGAGTTTCTGGCTACACATGCCTGTTCCATATGCTACTGAGTAGTACCCCTCTCCACAGCAGAATAGAAGTGCAGTTCAAGTCTCCTTCCATACAGTACAGTGGACAGCAATAATTCTTAAATGAAGAATAGTTTAACTCCTCATGAAAAGCAGGAGAAATTTGTTCCTCCTGCGTTCAAGACTCCCTGGGAGTAATGCTCTTCAACAGTCGCATCAGTCTGCTTCTCATTCCTCCTGAAGGTGGGATACCTCACCCACCAGGCATCACTCACTTTTGGAGCTTCCACTTTGTCTTCTCACTGTGGTTCTGCATGTAGAGCATGGGTGAGACTTGAGGGCAATAAGGAACCAATCCAAAACAGGACTTTTAGAGATATCCTATTTGCTCAGCTAATAACACATATTTTCCCTGAATAAGGGATACAGCCTTTTCTTGAGCCTATTATGAAGGGCCGATAATCTACATATTTGCAGAGTAAAGTAAACCAACGTAAACTTTGGCAAACGTTGTACAAAGCAACACATGACCCAGCTTCTGGAGGTGGGCCTCCTCTGAATGAAAAGCCCTGGCAGCACCATGCTCTCAGCAAGGTTGCGTAAGCTTGAGGGCAGCTCCCTGAGTGGAGCTGGTGCTGTGCAATCACTTTGACATGGAGGGAGCACAGGTTTGTCTGCAAAACACTGTGCACATACAGCCAGAATCTCTCAGTACATTCTTCTAAATTCAGGTACAAATTTTGCTTAGACGTAAGGCTATAGTTTTATTTAAGTGCATGACTGTTGCAGACAAATTGAATTTTTTTTTTTTGCTCAGTGCAACCTTCAGAGAAACAGAATCACCATCAATGACAGATCCTGTACAGATTTCTCTGTGTTGCTTCTTTTCTGTTTGTCACTTTTAATGATATTTGTAACAGCTGGGACGTGTACAGCTGTTCCTACCTTTGTGTTACAGAAAACTGTAGAGGATTTGGCAGAGAGTTCAGCAGGGCATCGTGAGTCACACTTCCCTTTTCAGGGTATTTTTGGAACTATCAGAAATCTTTTGAATACATTCTGACAGTGTGAAGAAGTAAAAGCTGCAGTTCCCTCACTTTGATTTAACTGAATCTTGAAAGACAGGGATGGATGAAGGTGAAGGAGAAGACACAGAAACAATACTGCCTTGACTCATTTTCTTGTCCATAGTAGGTTGACGTTTCTGGCCTTTAGCTGCTTCAATTGCTTGCTGAGTGTGGCTGTGAGATCTAATGTCTCCAGCAAATGATTTCTGATAAGAAGAGAGAAAATTGGTTATTTTGGTTCACAATGTCTATGTGCATGATAGTAATGAAACTTCAGCATAGATGTCAACAGAGCTAAAGTGGTTGCTGTTTAGCAAGTGAAGCAGTATAACTGCCCTTGAGGGGTCTGTGCCCTTTGACAGCAAAGCAGAAAAATATTGTGTTCTGCAAATCTGCTCTGCTGCACTCCGAGAGTGGAGAATATAATCTGTTTTAACAAGCACTACTGTTCTCATAATGTCAGCTGAAGAGGATTACAAGAGAATCAATTTATGTAATTAAACTTCCTTGGCATAAATAAAGGGTTTTTTCCTTAAAAGAGAAAAAAAAGAAAGAAAGAAAGAAAGAAAAAAGTCTCCTTGGCTAGAGCATTCCACTCCCTTCTTGCAGGGCTGTTGTTAACTTCCTGCATTTCCTTAAAAATGGTTGTTGAAACAAATCTTGGGAAATATCGCTCTTACTGACACTCAGTAACATCTCCCCATAGTCCGTGTGTAGCAATATCACCAGAAAGCCTAACTTAGCAGATGTCTTGGTTTGGATCATTATCTTTCACTTTGGCAGTGAAAGATAACAAACTAGTAAAGCTTGATGCAGTACTGCAGCTCCCACATCTTTCCTTCATGTGAATGTTGATAGGTCTTTCTCAAAGTCATACTGATATTAGATGCATCCTTTGGACATAAAATGACCTTCATGAAGGAGCAAAGGACAAATTCCGTCAACTGCCCAAACTTAAATTTTCTACTGCAGCTGTTAAAAGGATGGAGGTATAAATAGAAGCATGGGTTATGGAGGGGAGAGGTTTTTCTTGAGGGGGTAGGATTCTGCCTACACCTCTGGAGTCAAATGCAATGATGTCTTTAGCTGGTAAATGGAAAAATCAAGCAGTGGCAGACCATGCAAAGCTAAAGATTTAATTAAATTTTAATATTACCACAGACTTTTAAATGTAACCTGAGATGCATCAACCCAAGAATTGTCTCACCGTGTTCTTGCAAGGATGCAATACTAGCAGGATAGTTCTTGCAGCACAAATGTGTTCCAAAGGAAAGAGAAGAAAAAATCCTTCTGGAGGATTTTTAATTGCTTTATATCAGGTCTGTCCCTTTTGGTGCTGCTTGTTTGTGTTCTACGTGTTTTTTGCTTCAAGATACTTAAATACATGCAGAATTACAGCCCACCTATGGGTTCACTGTTACAAAAAAAGACCACAGAGCTGTACTGGCTCCTGCAGTGAATTCTTACATGCTTGTGCCTTGATATTAAGGTTGCAAAATTAGTCATCTACAGTGAGTAGGAAACTCCTGCCTTTGTGCTTACAGGCAGTGGAAAAGCTTTAGTGGTGACTGGCTCCTGCTCGAGGGAAGGAGAAGCTGCTCTGCTGCTGGCAGGGTGAGGACAGGCCCTGTGTCACTCTCAGAGAATGATCATTACAAATGAATGACATAGAGGAAAGTGCTGGATGAAGTGCACTCATGCCTGTATGATTGCATTCAGTATGGGAGGACATCACCTGCCTGTTTCTTTGTGATCCTTCTCAGGCTGGCATGTGACAAATAAAGCCAAGTGGGTGCCTGCCTGGCTCTGTGCCTCTGCATCCCCCTCATCACCCAGCCTGCCAGGAGGCAGGGGATGTTTGTGGAGTGGGTACAGGCCGTGACCTCTGCAGTAAATCTTACTGAGTGAGCTCAGAAGATTCTTAGCTTGCCCCATCAGGGTTACGTTTGTTCATTCTAGCTTTCCCATTGGTGTAGCTGCCTTTTTCTCCTCTCCACCCTTCATTGTATGTTGGAAGGCCTTCTTTGAGTAGAAAAATCCTGTCTGCTTTTACTCACGCTGTATGTCCAAATGTCAAAATTACAGAATTTCCTTGATCTTGTATGGAATCAAGATGAAAAACAATTGCGTTTCACACCAGGGTTTTTCTGCTGTCCCATTTTACCAAAGCGTCTGTTCAATAGTACCAAAGGGCATGCAGTCTTATCAGGAGATTCAGTTTACTTTGTAGTCTTTTGTGTTTGTGCCATACTGTGCATATGAGCTTGATTTGATTTGGTTTGTGAACTCTGCTGTTCCTTATCCAGTTTCTCTTTCCCCAGTTTTCCCCCATATCCTAAAGTAAATACAATTAATGTAAATTGTAAACTGCATTTTCTGCTATTTTCACTCTGTTTAACAATGTATTTCTTTCTTGGATAGAGATTAATACAATTTGGGATAGGAATTTTTTTGCTAATTTCTGTAAGACTGCATAACATTTTTTTGCTCGATTAGAAGAGAGAGATTATTTCATTTTGTCTTAGTTTCAGCTGGGATGGGATTCTTTTCTTCAGAGTATGATGCTATGTTTTGGTTTTAGGAGAAAAACAATGTTAACACGCTGGTGTTTATAGTTGCTGCTAAACAGAGTTGTACAACACCAAGGCCATTCTCAGCAAAGGGCTAAGGAGCTGAGAGGGAACAGAATTAGGACAGCTGACAAACTGTCCGAAGGGGTATTCCATACCATATGGCATCTTGTGGAAGGAGTTCTGAAGGGTTGGGTATTCATCACTCTTCTGTTGCTCAGGGGCAAGCTGGGCATCAGTAGGGGGGTGATGAGCAATTCCTTGTGCATCACTTGTTATATATAAATATATATATACACATTATAATTGTTATCAATTTCCTTTTCTCTATCTTAGTAAATAGATTTGTCTCAATACACAAGTTCTACTTTGTTTTTTTCGATTCTCTTCCCCATCCCACTGGGAAGTGAGGGAGTGAGCATATGACAATGTGGTGCTGAGCCACCTGCAGGGTTAAACCACAATACATTTTGAGATAAACTTTACTGAAATTTAATCCTAATAAAAAATATTTGAACTTTTAAAATCTGTTTCTAATTTGTACTTTTTTTTTTCCTCTAGAATACAAGAAAATTCTTCTGGATTAGGATATATTTCACATACTCCAGTGGTTCTGTAGCACTTTGCTACAGTCTGACCAGCACAGCCAGGCTTAGAGCACCATCATTACTAAGCTAGAAGTATTACCATCCTGAATGCTCTGTCAGTACTAAAAAAAAAAAAAAAAATTTCCTGTTCTGTTGTTCAAACATTCATGTATTTGAATTCAGAACAATGGAAATATGTGATATTTTGGCTGAATTGCTGTCAAGATGGTTACAGATGCAAGATATAGTCTGTTTCCTTACATCAAGAACTTTTATTCTGTCTTTTCTAG
Seq C2 exon
ATTTGAACGTATTCATACAAAGAAAGGGAACTACAGTAAGTCACTAGTTTCAAACCAAGAAGACGTAGATGATTTAGCAACCTTGGAGGTACTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647:ENSGALT00000012375:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(7.9=39.6)
A:
NA
C2:
PF0006316=Myosin_head=PU(1.6=32.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]