DreINT0100840 @ danRer10
Intron Retention
Gene
ENSDARG00000061635 | myo5aa
Description
myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
Coordinates
chr18:38957097-38959820:+
Coord C1 exon
chr18:38957097-38957268
Coord A exon
chr18:38957269-38959675
Coord C2 exon
chr18:38959676-38959820
Length
2407 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAAT
5' ss Score
6.76
3' ss Seq
TTATTATTTTTTTGACACAGGTA
3' ss Score
9.16
Exon sequences
Seq C1 exon
GACCTGGAGTTTAAATTGGACCCCAAGACGAACAACTTGCCACACCTGCGTAACCCGGATATCCTGGTGGGAGAAAATGACCTGACTGCTCTCAGCTACCTTCACGAACCTGCTGTGTTACACAACCTGAAAGTACGCTTCATCGACTCCAAGCTCATCTACACATACTGCG
Seq A exon
GTAAATAAAAAAGAAATAAACACACACACACACACACACACACACACACACACACACACACACACACACACACGGACTACTGTATGTACAGAACTTCTATCCTCCTACTCCAACCCTACACTGTAAATAAATGCTGCGTTACACACCATTTCTTAAAGGTGCTTTATGTAAGTTTTTGACTTCTCTTAAGCATAACAATATCATAATAAGTTTGCAGATGTTTAAGAAACATGCTAAGTGAACATTCTGTTTATCTGAAAAACAATGCTAAAGTCAGATATTCTGCTTTGAAAGTGTGAGTTACATGCCAGAACGTCTGCCATTATCTTAGTCCTTTTAACCCCCCAATGTCAGTTTATTCATTCAATCATTTTCTTTTCGGCTTAGTCCCTCTATTAATCTGGGGTCGCCACAGCGGAATGAACCGTTAACTTATCCAGAACGTTTTTACGCAGCGAATGCCCTTCCAGCCGCAACCCATCTTTGGGAAGCATCCACACACACTCATTCACACTCATAGACTACGGACAATTTAGCCTACCCAATTACCCCATTCACCTCCATTTCAATATCAGTCCAAACACATGTGGTACAGGTGAATTGGGTAGGCAAAATTGTTAATAATATCAAAATACAGCAGCCCTCACTCTCACATGCACTCCACCAAGTCAGCACATTACTGGTGTGCTTGCATTGGCTCCCAGTTCAGTCCCGTATCATTTTTAAAACACTCACACTTGCATATAAAGCTCTACATCTTACCGCTTCTTCCTACATCTGTGACATTAGGCCCTATCGTACACCCGGCGCAAAGAGGCGCAAGGCGCGACACAATAGTTGTTTGCTAGTTTCAGCTTGGCGCAAGAGTCATTTTGACATTTTCCTCCACGCTGTTTAAATAGCAAATGCATCTGTGCTAATATGTGCGCCCATAGGCGTTCTGGTCTAAAAAGGGAGGCGTGTTGAGGCGCATTGCTGGCATGTTGCTATTTTGAGAAACTATAATAGATTTTTCAATAGACCAAAACAAAGACGGTCTATTGTCCAGCGCAGAGCGCATTAGTTGTGCACCTCGCTTACACACTGATTAAAACACACAAGATGTAGAGCAATACGCAAATATCTTTACAATGAAAAAGAATGAAAAATTAAGGATATATATATATATGATATAATAAGGATATTTATAGGATATAAATATTAAGGATTAAAATATTACAAAACTTTTTCATCTTGGGAGGCTTTTTCAGTTTATTCATAACAATTAGCTTTTTTATGTTATTATTATTAGCAGTATTATTTAATATATCCATATTTATATTTGTTTTCTTCAAAACAAGCTTAGATTTGTCCACCTGTCAGGTTTCAGAACTTATGGGGCACAGCATTTGTATTTGAATATAACTCGGTTTATTGATCACACTTCGTTATTAATATTCATTTGCTGGAAATTAGAACTGAATTTAGAAATAGTTGTGAAACAAATCTTTGCGCTTAATAAACGAAATTAATTATTTATAGGCTAATGGATGTCTGTGTGTACAAGGTTTCCCTATCCACGAGAGTGAAAGTGAAAGTAGATAATTAGAGGTCTTATCTCTCATTCTTGCACTTCAGATGCTCTGTTTAACTGTTTTCTTGCTAGTGAAATGCTCAGTTTTTCCACTTACAAAGTCCTCATGTAAATAGCAAATGTGCTATGGCGCGACACAACTGGCACAACTGACACAAGGGAATGGGAGATGAGACTTTGATTGGTTTATTCTCAAAACAGACCTATAACTCATTAAAAAAATAAGCTCAAATAAGCTTTTTAGACCATGTGTCACCGCGCAAAGTGGATTTTTCCGTCCTTATATTAGCAGAAGTGTATTCTGACACGCCCTAAATGCGTTTGCGCCCTGCGCTTTGCAATTTGCACATGGACGGTCAAAATAGAGCCCATAGTCTCTCAGTACACACCTCCTTGCTCCCTGCGATACTCTCACCCTTTAACAACCACCCTGTAGACTAAAATCAATGGGGGAGAGAGCCTTCTGTTTTGTTTCACCTAGGTTATGAAATACTCTCTCCTATTCTGTAAGAAATGCTTCTACACTAGCTAGTTTTGAAGATGCTAAAAACTCATCTTTTTAAGGCTGCATTTTTAGATTCTTGATTATTCAGTGTTTATATTTTAGAACTTTTTTTAGTATATACTTGTATTTTATTGCATGTTTGATTTTTCTGTTGTTGTAGCGCTTTGGGTCTTAGAAAAGCGCTTTATTAATACATTTTTTATTATGTATTATTATTATTATTATTATTATTAATAGTTAATGGTATGTTAATAGCGAGAACTAAACTTAAAATAAAATGCAACCAATGCACCTATTGAGTTTCTATTATTATTATTTTTTTGACACAG
Seq C2 exon
GTATTGTTCTAGTCGCTATAAACCCTTATGAGACTCTTCCCATCTATGGAGCGGACATCATTAACGCATACAGTGGGCAGAACATGGGCGACATGGACCCTCACATCTTCGCAGTGGCTGAAGAAGCGTATAAGCAGATGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061635:ENSDART00000133618:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.8=56.9)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]