MmuINT0104412 @ mm10
Intron Retention
Gene
ENSMUSG00000034593 | Myo5a
Description
myosin VA [Source:MGI Symbol;Acc:MGI:105976]
Coordinates
chr9:75120673-75123055:+
Coord C1 exon
chr9:75120673-75120844
Coord A exon
chr9:75120845-75122910
Coord C2 exon
chr9:75122911-75123055
Length
2066 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTCTCATCCTCCTCTCTCAGGAA
3' ss Score
10.1
Exon sequences
Seq C1 exon
GATTTGGAATACCGTCTAGACCCAAAGACCGGTGAGCTCCCTCACTTACGGAACCCTGACATACTTGTTGGAGAAAATGACCTCACAGCCCTCAGCTACCTTCACGAGCCCGCTGTGCTACATAATCTCCGAGTTCGCTTCATCGATTCCAAACTTATTTATACGTATTGTG
Seq A exon
GTAAGTGCTTTGCTGATGAGCTGTAAGCTTTCCTTTGATGGGTGTAGTGATTGAAATACACACAAGGAGAGCCAGCTATGATTGAATTTCTCATACATGTAAAAATCCCTTCTAAGTTATCAGAAAGATTTACCAATATTCAGTAGCTGGTTACATTTCTTGCCAAATACAGTCATTTGTGAATATACATAATTTTGCTCAACATTTAAAGAACAGGTTCATCTTTGGGACACTCCCTCCCAGTCATTTCAGACTTAGTGCTGAAGTTCCTAATTCTTTTTATTTTGTAAAACTCTGCTCTATGAAGAGCAGATGTGCAAGGACTGGCATGTGGTGCAGGTGCAGAGTTAGTGCTACCTTTCTTCTCACTGACGTGTGACACCCAGGACCACACCTCTTGGTGTCTGTCTCCCTCCTGCAGTGTTAGCTGCCAGCAGCCCAGTTCCTGACTCTTTTCTCAGAAATGAAGCTGGAGCCTGGGCGTATGGCTGTGGACCTTCTCCCAGCCCCATCTGTCTTTGTTTTTCTCTATTCTATTTTGTTCTTTCTGATTTCCTCCCACCTCTCTGGCTCCTTTTCCCTCATGATCTTCTCTCTCTCCTACTGATCATGACTCTGCTGAGGTCCAGATCTGGATGTTCATTCATTCCCCGTGTTCATTGGCTTGCTGACCATGCTGTGTTTGTCATGTCTTCACTGTTGTCTGTTTAAACACATACAGATACTTTTTCCTCTCAGAAGAATTTATATCTAATATATCTGTCTTGATAACATTTCTTACCCCAATTATTTAAATATTTTTCTTATCTTTCTTCAATTTATACTTCTAGATTTATGTGTATACGAGTTTTGACTGCATGTATGTGTGTACACCACACATGTGTACCTGGCCTGTAGAGGTCAGAAGAGGACCTTAGAGTTTCAGATGGTTATGAATCACCATGTGATGCTAGGAACCAAACCCTGGTCCTCTGCGGGAGCAGTGCTCTTAACTTTGCATACCCTCTATTTATTTATTTATTTATTTATTTATTTATTTATTTTACACATGTTATGGTTTTCTATGTTTTTTTTTTTGTTTTGAGACCAGTGTCTCATGTAGTTCTTTTTTTTTAAGATGTATTTATTTATTATATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAAGGCATTAGATTCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCCGTCAGTGCTCTTACCCGCTGAGCCACCTCTCCAGCCCTCTCATGTAGTTCTGACTGTCTCATTCTGTATCTGAGAATGACTTTGAACTTCTGATCCTCCACTTGTCTCTACTTTCTTTTACATCTAATATTCTTTAAAAGCATGTATTTTGCAATGTGGCACGATGCTTAAGTAGAATCACAATGATTTTAGTATATATTTTGTTTCTGTTTTCTATATGACGACCATTGTGATATCTTTCTAAAAGAAAATCCTTCAGATGAATCTCTAATTATTTCATTGGATAAATTTTTAGAAATGAGCTTTTGAATTTTTTATTTTTATTGGGGTGGGGGGATTGTATATACATGCCTGTGGGTACTCACAAAGTCTAGAAGATGGTCTAGAAGATTCCTCGGAGTTGTAGTTCCAGGCAGTGGTGAGCTGCCCAACATGGGTGCTGGGAACTGAACCTAAATTCTCTGCAAGATCAGCAAGTGCTCCTTACCCCTGAGCCCTCTCTTAAACCCCCATTTTTTTAAACTGAATATAAAAATGTTTAAGTTATTTAAAACATTGTTTCTTTTTTGCCACATGGCGATCAAACCCAGAGCTTTACAAATGATTGACAAGTGCTCTACCCCTGGCTAAGTCACATTATTTTAAAGAGTCTAGTCCAGATCAGTTAGGACTATGTACAATAATTTAGAATACCTAAGACTGTGGTGTATTTTGACCTTTGAGTAATTGATTAGTTTAATGTGAACCAAGCTGAAACAATGTGCCCTGTAGGAGATGATTGATGTCATTTTCTTTCTCATCCTCCTCTCTCAG
Seq C2 exon
GAATAGTTCTGGTAGCTATAAATCCCTATGAGCAGCTGCCTATTTATGGAGAAGATATTATTAATGCCTACAGTGGCCAGAACATGGGTGACATGGATCCTCACATCTTCGCAGTAGCTGAAGAGGCTTACAAGCAAATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034593:ENSMUST00000123128:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.8=56.9)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types