DreINT0101058 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3182182-3184792:+
Coord C1 exon
chr18:3182182-3182301
Coord A exon
chr18:3182302-3183835
Coord C2 exon
chr18:3183836-3184792
Length
1534 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TTCTGTTTGTCCTCCAACAGGGC
3' ss Score
10.09
Exon sequences
Seq C1 exon
GACATTTTAACCACATATCCCTTCACCAAAATCTCCAACTGGAGCAGCGGCAACACGTACTTCCACATCACAATCGGCAACCTGGTTCAGGGTAGCAAACTCCTGTGTGAGACCTCACTG
Seq A exon
GTGAGAGCAACACACTCTACAACTGCATAGCAATCACATTTCTAGTGGCGTTGTGCAAAAAGCACATTTATATATATAAAAGCATACATCTCACAATAATGCTTTACTCATTTAATCATTTTCCATGTATGGTGATTTTTGATAGCTATTACTGAGCAACAGATCATTCATTTATTCATTTTTCTTCAGCTTAGTTATTTATTAGGGGTCACCAAAGCGGAATGAACCGCCTTGAGCAACAGTTATTTAATAATTTGCATCAAGGGTACTTCTCAGAGTCATAAAGCATTACTTTGCTGCAGCAATCCACATGTGAAAGTTATTTTTAGATTTGTTTTAGAGGCTAAAATTCAAATCAAATGTTACCAAATATCTTGTGCTACTTCAGAATTGTATGTGTACTTCATAAATTTCACACTGGATGAGAGATCATCATCTTCAGCTTAACCTCTCGAAAACGGAAATGCTTGTAGTTTCTGCCAACCTGACTCTACACCATAACTTTTCAATCCAGATGGACGGGGCAACCATTACTGCATCCAAACGGTAAAAAAGCCTTGGAGTAACGATTGATGACCAGCTAAACTTCTCTGACCACATTTCTAGAACTGCTCGATCTTGCAGATTCGCACTCTACAACATCAGAAAGCTCCGACCCTTCCTATCTGAACATGCTGCTCAACAAATTGTTCAAGCTCTTGTTCTCTCCAGACTGGACTACTGCAGCTCTCTACTAGCCGGGCTTCCAGCTAACTCTATCAAACCTCTTCAGATGCTTCAGAACGCAGCAGCACGAGTGGTCTTTAATGAACCTAAAAGAGCACATGTCACTCCGCTGCTCATCCGTTTGCACTGGCTGCCAGTTGCTGCTTGCATTAAATTCAAAGCTCTGATGTTTGCCTACAAAGCGACCTCTGGCTTTGCTCCTTCTTATCTGCTCTCACTTCTGCAGATGTATGTGCCCTCCAGAAACTTGCGTTCTGTGAATGAACGTCGCCTCGTGGTTCCATCCCAAAGAGGGAAGAAATCACTTTCGCGAACGCTCACGCTCAATCTGCCCAGTTAGTGGAGTGAACTCCCTAACTGCATCAGAACAGCAGAGTCACTCGCTGTCTTCAAGAAACAACTAAAAACTCAACTATTTAGTCTCCACTTCACTTCCTAATCTGCAATTGCCTCTCTGGCTCCACCGCTAACTGTATTACCAAAAAAATAAATAAATAAAAAGTACTAATGTTTTGCTTCTCACACTTTACACGCCTGAAACTTGCCTACAGCACCTATTCATTGTTTCTTTTATCGTTGTGTAAGTTGCTTCCTTGTCTTCATTTGAAAGTCGCTTTGGATAAAAGCGTCTGCTAAATGACTAAATGTAAATAAATATTGTCTAAAGTAGGGCTGGGCGATGATAAAACGAAATATATCACGGTATCATGTTTTTATATATTTCAATTTTAACAATTCTTGAATATTTTTTAACAATTGAGTTGAAAGGACACATTTCCACACTCGCTTTCTGTTTGTCCTCCAACAG
Seq C2 exon
GGCTATAAAATGGACGACCTGTTGACCTCCTACATTAGCCAGATGCTTACCACCATGAGCAAACAGCGAAACTCGCGCGGCGGCAGCAGCAAGTGAACGTTTGATTGGCTGGAGGCGGTGGAGCTAGTGCGTCTGCTGCGTCCCATTGGCCAGCCCTGCAGCTGGGGGCGGGCCTTCGCGGCGCAACTGTGGCGGATGAGCAGAACTCCCTCTGCCAGCACACAGAGCTCAATGTACCCGGATGAAGACTCTTCCTCTGAGGACGACTACCTCTGAACACACACACAAACACACGGATTCATCCGTTCTCCAGAATATTCTTCAGATGCGCAATTTAGGTACCGTTTATTACGTTTTGTGAGTCGAATATAAACTGCAATGGCTTCTATGCATCCCAAACTGCTTTAAAGAGGCAGTGTTTGGGTTATTTATGTGTAAATGCACTAAGAAAACAACATGTGCACGACTTCCTGAAGAGTAATTGATTGATTATTTTTAATGGCGGCAGAAATATCTTTTATAATGGTTTAAATGTTAGTTTGTGTTCTGTTTTAGGAGGTTGTGATTTAAATGTTGTGTTTTTAAAAAGATTATTTGTTGCACTGCAGGCCTTAATAGGTTTTTGTTTGGGGGGGGATATGAGTAACTGCTTTTTTTTAACAGTACATGATCAGCATTCGTCCTCTAGTCTGTTGCTAAAATCTAATTTCCAGCTTAATTGAAGATTAAACTTAATATAGATCAAGTGTACTTTGGGAGGGAAAATGAGAATGACGAAAATGAATGGCCTTATTTAAAAATGAATATGAAAATGCGTCTATATTAATGCTTCAGGCTGATTTATACTTCTGCGTCCAGTGATCGATGTGACTCACGGTGTCTGCATTGTGCATAGTCGTGCATTTATACTTCTGCGTGCTGTTTGTGTTGCTCTGCAATAACACTTCTGAAACACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.290
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAATCGGCAACCTGGTTC
R:
TCCGTGTGTTTGTGTGTGTGT
Band lengths:
350-1884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]