HsaINT0108924 @ hg19
Intron Retention
Gene
ENSG00000137474 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:7606]
Coordinates
chr11:76924905-76926286:+
Coord C1 exon
chr11:76924905-76925024
Coord A exon
chr11:76925025-76925651
Coord C2 exon
chr11:76925652-76926286
Length
627 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CTTCTCACCCCTGCTTCCAGGGC
3' ss Score
8.71
Exon sequences
Seq C1 exon
GATATCCTCACCACTCATCCCTTCACCAAGATCTCCAACTGGAGCAGCGGCAACACCTACTTCCACATCACCATTGGGAACTTGGTGCGCGGGAGCAAACTGCTCTGCGAGACGTCACTG
Seq A exon
GTGAGGGCGCATCCTGCTGGGCCTAGTGGGCTCCCTGCCTTGCCTGCAGCGTAGCCAGCCTCCCAGGGCCTGGAACAAACACAGTAGTGTGCGGCTGGGCCTGGGGTCGTGGGCAAGGGTCATGCTGGGGCCAAGGTCAGGTCAGTTTGAGGCTCAGCTTAGGTCTGGGGAAGGGACTTAATCTGGGGCTGAGGAACAGATCCCTCGTTCAACAACTGTTGTCTGAGTGCCTTCAGTATCTGGGGATCGGGCCCACTGTGACAGCCCTTTAGCCCCCCGAGTTCAACAGTGGAACCATTAACAATGAGACCTCCTTGACCAAGCTCAAACTTCCAAGGCATAGCTCAACTGAGAGCCAGTAGGGTCACTCTTGGAGGGAGGGATCCGTGACTTGAGGGACCCACAAGCTAGGGGCTTAATGTGGGGTCATAACAGTGTAGAACCTTAGCCATCTGGCTGGATGAATTCAACCCTTCAATTGTGCAGATGGGAGATAAGCCCTGAGTAGGAGGGATTTGCCTTTGTCCTGGGTTCTGCCCATTGCAGATTCCTGGGAGCTGTGCTATGGTCTGAGTGGCTGGCCCTGTCCCACCGTGTGCTCGCTTATCTTCTCACCCCTGCTTCCAG
Seq C2 exon
GGCTACAAGATGGATGACCTCCTGACTTCCTACATTAGCCAGATGCTCACAGCCATGAGCAAACAGCGGGGCTCCAGGAGCGGCAAGTGAACAGTCACGGGGAGGTGCTGGTTCCATGCCTGCTCTCGAGGCAGCAGTGGGTTCAGGCCCATCAGCTACCCCTGCAGCTGGGGAAGACTTATGCCATCCCGGCAGCGAGGCTGGGCTGGCCAGCCACCACTGACTATACCAACTGGGCCTCTGATGTTCTTCCAGTGAGGCATCTCTCTGGGATGCAGAACTTCCCTCCATCCACCCCTCTGGCACCTGGGTTGGTCTAATCCTAGTTTGCTGTGGCCTTCCCGGTTGTGAGAGCCTGTGATCCTTAGATGTGTCTCCTGTTTCAGACCAGCCCCACCATGCAACTTCCTTTGACTTTCTGTGTACCACTGGGATAGAGGAATCAAGAGGACAATCTAGCTCTCCATACTTTGAACAACCAAATGTGCATTGAATACTCTGAAACCGAAGGGACTGGATCTGCAGGTGGGATGAGGGAGACAGACCACTTTTCTATATTGCAGTGTGAATGCTGGGCCCCTGCTCAAGTCTACCCTGATCACCTCAGGGCATAAAGCATGTTTCATTCTCTGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137474-MYO7A:NM_000260:48
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCACTCATCCCTTCACCA
R:
GTATAGTCAGTGGTGGCTGGC
Band lengths:
342-969
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)