DreINT0101103 @ danRer10
Intron Retention
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22272502-22272830:+
Coord C1 exon
chr21:22272502-22272621
Coord A exon
chr21:22272622-22272737
Coord C2 exon
chr21:22272738-22272830
Length
116 bp
Sequences
Splice sites
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
3' ss Seq
TTTTATCCTGTCTTCCACAGGGA
3' ss Score
12.45
Exon sequences
Seq C1 exon
GATATTTTGGGAACACACCCCTTCACCAAAATCTCCAACTGGAGCAGTGGACACACATATTTCCACATCACCATTGGAAACCTGGTCAGAGGCAGCAAACTTCTGTGCGAAACATCACTA
Seq A exon
GTGAGTCACACCTTTTGTTACATACATTACACAAAGACACCAGCTATTCCTTTAGATTATTGATGATATTTTGTTCTGTGGTTTAATAATGCTACTTTTTATCCTGTCTTCCACAG
Seq C2 exon
GGATACAAGATGGATGATCTTCTGACCTCCTACATCAGTCAGATGCTGACCACCATGACCAAGCAGCGCAGTTCACGGACAAACAACAAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632:ENSDART00000148019:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.291
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACACACCCCTTCACCAAA
R:
ACTTGTTGTTTGTCCGTGAACTG
Band lengths:
202-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]