GgaINT0104552 @ galGal3
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198105060-198106064:-
Coord C1 exon
chr1:198105945-198106064
Coord A exon
chr1:198105150-198105944
Coord C2 exon
chr1:198105060-198105149
Length
795 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
AACTTCTCTCTCTTCACCAGGGC
3' ss Score
9.49
Exon sequences
Seq C1 exon
GATATTCTCATCACTCATCCCTTCACCAAGATCTCCAACTGGAGCAGTGGCAACACGTACTTCCATATAACGATCGGCAATCTGGTGAGGGGAAGCAAGCTGCTCTGCGAGACATCCCTG
Seq A exon
GTAAGGAGGATTAAAGATTATGGCACACATTTAGAGCAAATTCTGACATTGGCAGGCCAAAATTAAATTCTTCCAGCAAGCAGTGTCTCAGAGAATCTCTGAGTTGCAGGTGGTCTCATAAATGAGGTCCCGTAGTTGTTTGTTTCTTCTGGACTTCAGCACTGTGAGGTTACTATCTCCATAACAGCTTTTTTTAAACGTGGGTTAGACATCAAGTATTGGAATGTGTCCAGTATGTAAGGTCTCACCTCTGCCTGTGCATCTATGCAAGGTTTTACCAGGGCTCTCATTGGGTTCATCATCCAAGTTACAGGCAAGCCTGAGGTGCCTGGGGCATTGCCACCCCATGAGCATGGGATTCTTCTACATACCATTAGAGTGAAAAGCATAACAAATCTTACTGTAGGAGGCTGCCCAGGGAGGTGGTGGAGTCACCATCCCTGGAGGTGTTCAAGAACCATGAAGATATGGCACTGAGGGACATGGTTAATGAGCATGGTGGGGATGGGTTGGTGTTGGACAAGATGGTCTTAGTGGTCTTTTCCAACTTTTATGATTCTATGAAAGCAGATGTGTGTTCAAGGGGTGTACTTTTACGAAAGTTTTTTGTCAATCTTGTCCCTACTAACAGTCACAACAAAAAGAACTGCTTAGCAAATCTTAGACCCAAAGAAGAGGGGGAAATACAAATGGACACATGTAAATCTATAATGTGTAGCAAGTGTGTTGATGAGGAATAAGCCAGAGATTAAGTTTTGCTATAAGGACATGTAAGAACTTCTCTCTCTTCACCAG
Seq C2 exon
GGCTACAAGATGGATGATCTTCTGACCTCATACATCAGCCAGATGCTAACAGCCATGAGCAAACAGAGGAGTGCGAAGGGTAGCAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0064018=PID=PD(50.0=82.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCATCACTCATCCCTTCACC
R:
TCACTTGCTACCCTTCGCACT
Band lengths:
206-1001
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]