RnoINT0097407 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163001875-163002553:-
Coord C1 exon
chr1:163002434-163002553
Coord A exon
chr1:163001967-163002433
Coord C2 exon
chr1:163001875-163001966
Length
467 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TTTCCTACCCTTGGTTTCAGGGA
3' ss Score
9.47
Exon sequences
Seq C1 exon
GACATCTTGACTACTCACCCCTTCACCAAGATCTCCAACTGGAGTAGTGGCAACACCTACTTCCACATCACCATTGGGAACTTGGTCCGTGGGAGCAAACTGCTCTGTGAGACATCACTG
Seq A exon
GTGAGAGCGCCTCCTAGTGCGTGGCATGGCTGCCTGCCTCTCCTGATGGAGTCTTAGAAGCCTAGTTTATTTAGGTCTGGGGAAAATGGCAGCTAGGGTGGAGGAAGAGAATCATCATTCAGCTGCTGTTTTCCTGTCTGGCCGTTGAGCCAGTGGAGGTGGGCCTTCAGCTCAAGTGTAACAGAAGAACTGTTAGCAATGAGACCATGAGCCCAGACTTCCAAGGCGCAGCTCACCTGGTAGGTTTTGCAGTCACTCCTGCAGCGAGGCATCCAGGCTTAGAGAGACCACAAGTCTGGAGCTCAAGATGGCAAGATGAGCCCAGCCACTCAAATGTGTAGATGGGGACAGCCTTGCTTTGCTTCTGTAACGTGCTCACTGCAGTATGTCCTGGGTGCCATGTCTGTGTGTGAGGGGTTTGCCCGTTCCACTCTGGGCTCTGCTCACTTTCCTACCCTTGGTTTCAG
Seq C2 exon
GGATACAAAATGGATGATCTTCTGACTTCCTACATCAGCCAGATGCTCACTGCCATGAGCAAACAGAGGAACTCCAGGAGCGGGAGGTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.241
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACTACTCACCCCTTCACCA
R:
GTTCACCTCCCGCTCCTGG
Band lengths:
206-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]