BtaINT0098302 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57413082-57419714:+
Coord C1 exon
chr15:57413082-57413201
Coord A exon
chr15:57413202-57419077
Coord C2 exon
chr15:57419078-57419714
Length
5876 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TCTTCTGCTGCTCTTTCCAGGGC
3' ss Score
10.7
Exon sequences
Seq C1 exon
GACATCCTGACCACTCACCCCTTCACCAAGATCTCCAACTGGAGCAGCGGCAACACCTACTTCCACATCACCATTGGGAACCTGGTGCGTGGGAGCAAACTCCTCTGTGAGACGTCACTG
Seq A exon
GTGAGAACTCTTCCTTCCAGGCCTGGGGTGCTCCCCGGCCCTGCCTTCCCTCATCCTCCCAGTCCCTGCAACAAACAGGAGGAGTGTGCCGTCTGGTCTGCAGTCAGGATCAAGGGTCAGGTTGGGGCTAAGGTCAGGTCAGATTAGGTCTGGGGAATGGGCTTATTAATCTAGAGATGAGAAACAGACTGCCCACTCAGTAACTATGTCCCCGTGCCTTTAATATTTAGAGATTGAACCTTTGGCCACTGACGTCAACAGCAGAGCTGTTAGCAATGAGGCCTCCTGGACTGAACTCAGCTGGTACAGCCTTCAGAAATCCCTACCTGTGGGAGTGACCATAATCATAACATTTATTGCTATAGAGTTAATTGTACACTACATTCTATTTGAGGCAATAATTGTCCTAACACTTACCATCATCTGATGAGGTAATCAAACAGAACACCTTAACGCAGGCCTTTATGTTTTATTCTATACACTTAGTAGGAGCTCTCTCACTATATCCAAAACATTACAGGCTCCCTAAATTTCTTAACACTTCACTACTGAACTCAAGCAATATCTGATTCTTGATCTAATGTCTTCACATGACTAGCATGCATTTATGGTAAAAATACCACTCTAGGGCCTTCATCTTTGATTGCCCAAAGCACGTGTAGAAGCCCCCATCGCAGGTTCCGTAGTACTTACAGCCATATCACTAAAACTTGGTGGTTATGGCGTATTATCAGAGAAGGCGATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATTGGATGCAGGAGCCTGGTAGGCTGCAGTCCATAAGGTTGTTAAGAGTCAGACACGACTGAGCGACTTCACTTTCACTTTCCACTTTCACGCATTGGAGAAGGAAATGGCAGCCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGAGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAATGACTTAGCAGTAGCAGCAGCAAGGCGTATTATGAATTGTAACACTAAATCCACTAACAGATTTTACAGTATATCCTTTTCTCATATTATCCCTATAACTACAACCAGTTCAATTTGCTTATATCAAACAGATCAAAATCACTCATCTCATATTCTTCCATCAGCCACCTGGCACTTGTTATTGTAGCTATTCTTATCCAAACACCTTGAAGTTATACAGGAGCTACCACTCTAATAATTGCCCATGGCTTCACATCATCCATATGATTCCGCTTAACAAATTCACGTTATGAACGAATTCACAGCCAAACAATAACCTTAGCCTGAGGCCTAAGGTTGCTAGTCTTACAAATTTACCTCTACCCCAGCCATTAGTCTGATTGGAGGGCTATTTGTAGTAAAAGCATCCTTCTCATGATCGACTATTACAATTACTCTAATAGGAATTAATCCAGTAATTCCTGCCTTATACTCCATATAATACTAATCATAATATAACAAGGCAAATACACACATCACATTAGTAACATCTTACAATCTTCTACACAAGAAAATGCCCTCATTAACACTTCATATTTTGCCTCTCTACTTCTACCACTAAATCCCCAAGTCATTTTAGGCCCCTTGTACTGTAAGTATAGTTTTAAAAAATACTAGTTTGTGAATCTAGAGACGGAAGATTTAGCCTTATTTACCAAGAAAGTATGTAAGAACTGCTGTCAGCAATATCTGATTCTTGATCTAATGTCTTCACATGACTAGCATGCATTTATGGTAAAAATACCACGTAACATGACTTTTTCAAACTTTTAAAGGATAGTAGTTATCCATTGGTCTTAGGAACCAAAAAATTGGTGCAACTACAAATAAAAGTAATAAATTTTCCTTTCACATGAGTTACATTATTTATATTAATACCAATCACAACAAATATCAACCAATAAGAGTGACAGTATCCATTATCTCATACGCTTTTATTATTAGTACAATCCCAATAATAATAATCGCTTGGCCTGCATGAATGATTATCTCAAACTGATACTGAATCACTATCCAAACTCTAAAGTTATCACTCAGCTTCAAAATAGACTATTTCTCAATAATCATACCAGTAGCATTATTTGTTATACAACCCATCATAGAATTCTCAATATGATACCTATACTCAGATCCTAACGTCAGTGGATTCCTCAAATATTTACTCCTTTTATCACAATACTAATTCTTGTTACTGCTAATAACCTTTACAGCTTTTCATTGGATGTGAGGGGGTCGGAATGATCTTTCCTGCTTATTGGGTGATGATATAGATGAGTAGATGCACATACAGCTACTCTACAAGCAATTTTATATAACCATATTGGAGCTAACAGATTTGTTATAGCAATAGCATGATTTCTGATAATTTAAATGCATGAAATCTTCAACAAGTCTTTATACTCCAACTAAATCACTCAAATCTACCCCTACTAGGTCTCATACTAGCTGCAACTGGAAAATCCGACCAACTTGGCCTCCACCCAGAACTGCAGTCCCTCAGCATCAGGAGGCCCTACCCCTGTCTCAGCCCTGCTCCACTCAAGCACAGTAGTGGTAGCAGGTATTTTCTTACTCATCCACTTTTATCCTTTAACAGAAAATAATAAATTTATTCAAACAGTAACTAACTGTTTATGGCAATATGCACTCTTACCCAGAATGTTAAAAAAATATTGCTGCTTTTTCCACTTCAAGCCAACTAGGCCTATAATAGTAACAACTGGCATTAATCAACCCTCCCAAGCATTTCTCCATATCTGCACATATGGTTTCTTTAAAGTCATGTTATTGATATGCTCATATCCATAAAAATAGGAGGCCTGTTTAAAGCAATACTCTTTACCACAACTGCCTTTACAACTGGCCTAGCACTAACAGGAATGCCTTTCCTTGTTGAATTTAAAGATCTGATAATCCAAGCTGCTAACATGTCAATACCAGCACCTGATCCTGCTGTCTAATTGCTACGTCCCTCACAGCTGTCTACAGCACTCGCCTTATCATCTTTGCACTACTAGGACAACCTCGCTTTTCCACCCTAACTTTAATAATGGAAATAATCCTCTCCTAGTCAGTTCCATCAAACGTCTATTAATCAGAAGCTGGCTTTATTTTCAACAATACCCCCCCAACAACAATCCCTCAAATAACTATACCTTATCACCTAAAACTAACTTCCCTTGCCATAACCATTCTAGGTTTTACCTTAGCACTTGAAATTAATAATAACACACAGAATTTAAAGTTTACTCTTCAAATATATTCAGGCTTTCCAAACCCTTAGGGTATTTTCCCTAAGAGGGAAAGTATTATTATACACTGTTTATCACCCTACTTAAATCTATCAACAAACCAGAAATCAGCCTGTTGATTAGAAAATATTTTACCAAAAATTACTTCCCTTATTCAGATAAAAATCTCTACATTAGTATCAGACCAAAAAGATCTAATCAAGGTATATTTCCTCATTCCTCATCACCCTCTTCCTAAACATAATTCTATTTAATTGCCACGAGTAGTCTCTGTAATAACCACAACACCAATACGCAATGATCAACCAGTAATAATCACTAATCAAGTACCACAGCTATATAGTGCTGCAGTCCCCATAGCTTCTTCACTAAAAAAACTCAGAATCACCTGCATCATGAATTACCCAATCTCCCAAACCATTAAACTTAAAACACAACCTCCACTTCCTCATCTTTTAAAACATAAAATACAACTGAAAACTCTGTTATTAAATCTGAAAAAAATGCTCCTTATACAGTCTTATTGGAGATCCAAACTTCAGGATACTGCTCAGAAGCCATAGCTGTTGTATAACCAAACACCACTAATGCCGTGCTTAGTTGCTCTGTCGTGTCGGACACTTTGCAACCCCATGGACTGTAGCCTGCCAGGTTCTTCTGTCCATGGGGATTCTCCAGGCAAGAATACTGGAGTTGGTTGCCATGCCCCTCCCTCTAGGGGATCTTCCCAACCCAGGGATCGAACCCAGGTCTCCTGCATTACAGGTGGATTCTTTACTGTCTGAGCTACCAGGAACTCCCAAACACCACTAATATCTCCCATAAATAAATCCAAAGCTATGACAAACCTAGGCAGTGTATTAAAAAGCAAAGACATCACTTTGCTGGCAAAAGTCCATATAAAAAGTATTCAAGCAGCTGAGAGACTGGAAAAGACCCTGATTCTGGGAAAGACTGAGGGCAGGAGGAGAAGAGGGAAACAGATGATGAGATGGTTGGATGGCATCACTTATTCAATGGACATGAATTTGGGCAACCTCCAGGAGATGGTGAGGTACAGGGAGGCCTGGCATGCTGCAGTCCATAGGGTTGCAAATAGTTGGACATGACTTGGTGACTGAACAACAACCACAAATAAATCCAAACACTATTAATCCCCCCAAAAACCCATGAAAATTCAACACAATTCCAACATTATCACCCACAATCAACTCAAACCGACCATGAAGGTTTTGAAGAAAACTCCCCACAAAACTAATTACAAAAATAGTACTTAAAATACAATGTATGCTATCATTATTCTTACATGGAATCTAACCATGGCCGTTGACATGAAAACTCATTATTATTCAACTACAAGAGCACTAATGACCGACACTGAAAAATCATGCCCATTAATAAAAATTATTAACAATGCATTCACTGATCTTCCAGCTCCATCAAACATTTCATCATGATGAAGTTTTTGTTCCTAAAAGGTATTTGTTTAGTTTTACAAATCTTAACAGCTTTGTTTCTAGCAATGCACTACATGTCAGACGATAACCACCTTCTCATTAGTTACATATATCTGCTGAGATGTAAATTACAGATGAATTGTTCAATACATACATGCAAACAGATCTTCTGTATTCTTTATCTGCCTATTTATCCCTATAGGATGCAGTCTTTATAATGGATCCTACAGTTTTCTAGAAACATGAAAACATTGGAGTTATCCTGTTATTTACAGTTATAGCCACAACATTTATAGGTTTTATACTACCCTGAGGACAAATACAATTTTGGGGGGCAACAGTTATTTCCAACCTTCTCTCAGCAATCTCATACGTCAGTATAAACCTTGCTCAATGGATCTGAGGCGGTTTTTCTGTAGATAAAGCAACTCTTACACAATTCTTCACTTTCCACGTCACTCTTCCATTTATCATTGCAGCAGTAGCTGCTGTCCATCTATTAATGTTTCATGAAACAGGAGCTAATAATCCCACAGAAATCATCTGATATAGGTAAAATCCCATTTTGTTCCTACTATATAATTAAAGACATCCTAGGTGTCTTTTTTACTAGTTCTAGAATTAGTATTAGTCCTATTTTCCAATAGTATTAGTCCTATTTTCACCTGATTTATTAAGAGATCCCAACAATTATACCTTGGTAAATCCTCTCAATACACCACCACACATTTAACCAGAGTGGTGTTTTGTACTTGCATATCCTATGAACAACTAACTCATCAATCCCCAGTTAACTAGAAGTACTAGCCCTAATCTTTTCAATCCTAGTCCTAATACCATTCTTCACACATCCAAACAATGAAGTATGACATTCCAACCTCTTATCCAATGTTTATTCTTAGTAGGGATTTGAGCAACCCACAAACTAGCACCTTAATGTGGGATCACAATAACCTAGAACCCTAGATATCTGGCTGGCTGAATCCATACCTTCAGCTGTGTGGCTGAGTCCAGAGTGGGGCAGGATTTGCCTTTGTCCAGGTTTCTGTCCCCTGCAGTTTCCTGGGTGCTGTGTTCTGGGTAAGAGTGGGTGGCTGTGTCCTACTTGGTGCTCTGTTTTATCTTCTGCTGCTCTTTCCAG
Seq C2 exon
GGCTACAAGATGGATGACCTCCTGACTTCCTATATTAGCCAGATGCTTACGGCCATGAGCAAACAGCGGGGCTCCAGGAGTGGCAAGTGAACAGTGGCCCTTTTGCTCTGGCCCTGTGCCTACTCTCAAGGAAGCAGTTGGCTCAGGACCATCAGCTACCTCTGCATCCAGGGGAAGACCTTGGCTATCCAGGCAGGGAGGCTGAACCAGCTGGCCACCACTGACTGTACCAACGTGGCCTCTGATCCTTCTTCCAGTGAGGTGACCTTGCTGGGATGTAGAACTCCCTCCATCCAGCCTGAAGCACCTGGTTGGTTCTAGTCCTGGCTTGCTGTGACAATCCCAGTTGTAAAAGCCTGTGCTCCTCGGATGTCATTCTTAACTCATACTAGCCCTACCATGTGACCTCTTTTGAGGTCATGGCCCGGAAATGTAACCAACAGGACGACCTAGTTCTCTATGCTGGGAACAACCAAACAGATTATCCTGAAACCTAAGGAACTGGCTTAATACCCCTAAGTCCAGGAGCTTCAGCTGGGATGAGGGAGACAGACTGCTTCTAAATATTACAGTGTGAGTGCTGAGCTGCTGTAAATCTCCCCTGATGATCTCAGGCATAAAGCCTGTGTTTTATCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.207
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development