DreINT0101069 @ danRer10
Intron Retention
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22243815-22245314:+
Coord C1 exon
chr21:22243815-22243952
Coord A exon
chr21:22243953-22245176
Coord C2 exon
chr21:22245177-22245314
Length
1224 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CCTCATTCTCTTCTCTGCAGATG
3' ss Score
11.39
Exon sequences
Seq C1 exon
GGAATGGAGACGAGGAAACGCTCGCCGACTCTCAGCAGTCAGTTTAAGCGCTCACTGGAACTGCTCATGAGGACGCTGAGCGTCTGTCAGCCTTTCTTTGTGCGCTGCATCAAACCCAACGAGCTCAAAAAGCCCATG
Seq A exon
GTGAGTAAACCAATATTTCTGTGCTTGTTCCAGGAGATGCAGATGTCAAGTTTAAAAGCAGTAAAGTTGTTAAAAAATTTTAAGTCCCAGAGCCAGTCAAACAGCATTTCAGGATAGTTAATAAAGGTGTCTGTCTGTCTGTCTGTCTCTCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCACAACCCTTCATATGATATGAGGTCTGGAGATTTATGTATTTAATTATTTCTTGCAATCCAGGACAAGCGTTCTATAGAATGAATTATGTATTCGTTTTTTATTTCGGCCATAGATAAAATATGCATTCAGAAGAATTAATGGATGAATGGGTGCATTTGTTTGCTTATTTTATTATATGGGTAGTCAAATTGGATCATTTACACATTTGGTTCAAAGGCATGAATATGGATTGCACAAACAACTATGTGTAATACAATGTATAAATATGATGTAAAACTACAACATACAATTTGCACACAGATCTATCTATCTATCCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTGTCTGTCTGTCTGTCTGTCTGTTCGTTTTTTATCTATCTGTTTTTATCTATGTTTTTCTATCCATCCATCCATCCTATTCTGCGTTCATTCTGATGTTTTCTTGCATTCTCTTGAATCAGTTCGGAGCAGTTCTGAGCTGTTAAAAAAATCCATACTCTTCTTTCACCAGTTCCTCACAAAAATATCAATTAATAATAACTTTAAGTGAATTTAAGTAGTTTAAGTGAATTACAAGAGTGTTCCCTGTGAGCTGTTTACATTGATTTTGTGACATAAAAGCCAACTTACATAATAGAACTGAAATACACAAGCATCCTTCCTAGTGAGCAGCAAAAATGGGTTTTGTCTTGTTTATCATTTAAAGAGCCTTAAACCAAGTTTTATTTAGAAATCAAAGTAAAAATTCATTTCTTAACCATACATTTCATTAAAAACCAACCAACAATACGAGGAAACTAGTAGACATGTTAAGATAAAGATATTGTCTGAAGAGAATGTATAATACTGATTATGCTAATGAGAAGAAAAAACTTTAAAGTCAAACTCTGAATCGGCCCTCATTCTCTTCTCTGCAG
Seq C2 exon
ATGTTTGATAGAGGACTGTGTGTCAGGCAGTTGCGCTACTCTGGGATGATGGAGACGATCCGCATACGCAGAGCTGGATATCCCATACGCTATACCTTCGCTGAGTTCGTGGACCGCTATCGGGTGCTAATGCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632:ENSDART00000148019:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGGAGACGAGGAAACGC
R:
CAGGCATTAGCACCCGATAGC
Band lengths:
274-1498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]