MmuINT0104547 @ mm10
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98083508-98085521:-
Coord C1 exon
chr7:98085384-98085521
Coord A exon
chr7:98083667-98085383
Coord C2 exon
chr7:98083508-98083666
Length
1717 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CTTTGGTTCTGGCCCGGCAGCTC
3' ss Score
7.08
Exon sequences
Seq C1 exon
GGTGCCGAGACCAGGAAGCGCTCGCCTACACTCAGCAGCCAGTTCAAGCGGTCTCTGGAGCTGCTGATGCGCACACTGGGCGCCTGCCAGCCCTTCTTTGTGCGTTGTATCAAACCCAATGAGTTCAAGAAGCCCATG
Seq A exon
GTGAGCCTCAGAGGGGATGTGGTGGGCAGGGGTGGAGGGTGGGAAGGGAGGGGGCAAAATGGATGAGGTAGGTGGGCAGTGGAAAGAAAGCCTTGTTCTCTCTGGAGACTAAAGGGCTTGTCAAGTTGCTGAGGGCATAGGGGCTCCACAGTCACCTTAACCTTGGCTTTGCTATCTCCCAGCTGGGCGGTTGTACCTAAGTCAGACACTGCCCTGTGCCTCGGTGTCCTTGAGAATGAAAACTCCCCAGAGACCATGCCTGAAGATTGTAGAGTGCCTGTTAAGTGCTTAGTAAATACAAGTGTGGCTCGTGCTGGGGCCCCTCCCTTGAAAGCTCTCTTCCTCTCAATTCAGGGCCCACCTCCTCCATGAAGTCCTTCTGGACTCCTTTGCCTGAAGGTCCCTCTTTTTTTTTTTACTATTAGTGACAGCATTTGTTAGCCCTTCCATACACCGGATAGAGTCCCTTTCAGCATATTGCCTATGAGGAAGTGACAGTCGTGAGTTGTCACATGGGGGCTCAGGGATTGAGGGGCTCAAGTGCCATAGGCTGACTAGCTGCTAGCTCTCTGTTTCAGGGCAGGCCCTGCGAGGTGTTGTTTATCCAAAGGAGGGGGGAGGTCCAGGGGAAGCTGGGTGTGGGGCTTAGGGAGGGAAGGAAGGCAGGGGAAAGTGGCCCAGAGGGAGAGGAAACGGGCTACGGAAGCTGACCTTCCGCACACGCTGTCCCCGCCAGGAAATCGGTTCCCAGAGTGGGTGAGTCTCATCCTCTTCAACCCTCTGGAGCAGGGCAGCAGGGTGACATGGCTGGGCACTGGCTCCCTGAGGCCTTTTCCCAGCCCAAGCCTCCCCCTTTGCCGCAGCTTGCCTCCTCCCCTCCCCTTCCAACATCATTCATGTTCTTCATTTATGAGAAGATCTTGCTGTGTAGCCCTGCCTGGCCTAGACCTTGCTATACAGATGAGCTCACAGGGACCTATCTGCCTCTGCCTCTTGCTTGCTGGGATCAAGCATGACCGACCCCCCCTGACATGATGCTATTCTTAAAATAAATCCTGCCCAAGAATTTCTGCTGCAAACCTTCCCTGGCTCCAGCCACCCATGGGACAAGGCCCAGACTTTAGCCTGGTCTCCCTCAGAAGGCCCCGGGCCTGTTTTCTGCATTTTCGGTCCATCTGAACTCAGGGTGTAGCCCTGCCCTGGAGCTATCACAGTGGCTACCACAAGGCAGTGCCTCTTCCTCAAGGCAGCACAGCCAGCCCCTGGGGAGTTGTTAAAACAGCTGTGGTTGTGCATGGAGGCCACTTAAAGGGGAGCCTGGGGTTGTGTGGAGTACCCACCTCCTGGCCACTCCACTGCATCCTGGCCTAGGCTCTTCAGCCCCCTCCTTGTTCCCCACAGCAGGGCTTACACTTTAAACTTCTGCCCCTCCCCACACGCTCGTCCTCCTCCAGCCTTGGAAGAGCCTTCACTAATATCCATGAAACCGCCTGTGTCTTCTCTTTTGAGATCTGGTCCCACAGTACACGGTTGTCCACCTGCAGGTCCCCACTTCCTGCTGCCATGTGGGTCTGACCAACAGACCTTGCCTCCTGCCTGGCTTTGCTCTTAGGAGGCCTCGACTTCTCTGTGTTTCTGTCTGTGCTGGTCAGACACGGGGCAGGGCCTGCATCCCAGTAGTGGCCTTGCCATGATGCCTTTGGTTCTGGCCCGGCAG
Seq C2 exon
CTCTTCGACCGGCACTTGTGTGTACGCCAGCTGCGATATTCGGGCATGATGGAGACAATCCGCATCCGCCACGCAGGCTACCCCATTCGCTACAGCTTTGTGGAGTTTGTGGAGCGCTACCGGGTACTGCTGCCTGGTGTGAAGCCAGCATACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761:ENSMUST00000107128:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCGAGACCAGGAAGC
R:
TGCTTGTATGCTGGCTTCACA
Band lengths:
295-2012
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types