RnoINT0097372 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163033095-163035142:-
Coord C1 exon
chr1:163035005-163035142
Coord A exon
chr1:163033254-163035004
Coord C2 exon
chr1:163033095-163033253
Length
1751 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CTCTGGTTCTGGCCCCGCAGCTC
3' ss Score
8.01
Exon sequences
Seq C1 exon
GGTGCAGAGACCAGGAAGCGCTCGCCTACACTCAGCAGCCAGTTCAAGCGGTCTCTGGAGCTGCTGATGCGCACACTGGGCGCCTGCCAGCCCTTCTTTGTACGATGCATCAAACCCAATGAGTTCAAGAAGCCCATG
Seq A exon
GTGAGCCTTGGAGGGCATGTGGTGGGCAGGGGTGGAGGGTGGAGAGGGAGGGGGTAAGATGGATGGGGTCGGTGGGCAATGGGGAGCCTTGTTCTCTCTGGGGACTAGGGGTCTTGTCAAGTTGCTGGGAACCTAGGGGCTCCAAGGTCATGTTAACCCTGGCTTTGCTATCTCCCAGCCGAGCAGTTGTACATAAATCAGACACTGCCCTGTGCCTCAGTTTCCTTGAGAATGAAAACTCACAGCCACTTTCTCCTCAGAGACCATGCTCCAAGATTGTAGAGTGCCTGTTATGTGCTTAGTAAATACAAATGTGGCTCATGATAGGGCCCCTCCTTTGAAAGCTCTCCTCCCCTTAGTTCAGTGCCCTCCTCCTCCAGGAAGTCCTTCTGGACTCCTTTGCTAAAGGTCCCTCCTTTTTACTATTAGTGACAACATTTGTTAGCCCTTCCATACACGGAGTAGAGTCCCTTTCAGCACATTGCCTAAGAGGAAGTGACAGTCCTGAGTTGTCACATGGGAGCTCCGGGATTGAGGGGCTCAGGCAGACTAGCTGCTAGCTCCCTGCTTCAGTGCAGGCCCTGAGAGGTGTTGTTTATCCAAAGGAGGGGAGAGGTGGGGGAAGCTGGGTGTGGGGCTTGGGGAGGGAAGGAAGGAAGGCTGGGGAAAGTGGCTGAGAGGGAGAGGAAATGGACCACAGAAGCCGACCTTCCGCACGCTGTCCCCGCCAGGAAGCCATTTCCCAGCGTGGGTGAGTCCTGTCCTCTTCAGACCTCAGGTTTCCCTGAGCCAGGGCATGCAGGGTGACAGGGCTGAGCACCGGCTCCCTGGAACCTTTTCCCAGCCCAGGCCTCCACCTTTGCAGGAGCTTGCCCCCCTCCCCCTCCTCTGAACACCTGCTACACTGAGGATGACATCATTTATGTTCTTGGTTGTCACAAGGTCTTGCTATGTAGCCCTACCTGGCCTAGACCTTGCTATACAGACTATGCACAGGGACCTCTCTGCCTCTGTCTTCTGCTTGCTGGGATTGAGCATGACCAACCCAGCACATGATGTTGCTATTCTTAAAGTAAATCCTGCCCCATATCTCTCTGCTGCAAACCTTTCTTGGTTCCAGTCACCCATGGGACAAGGCCCAGACTGGTAGCTTGGCTTCAGAAGGCCCCTGGCCTTGCTTTCTGCCTTTTCTGTCTTTCTGGACTCAGGATGTAGTCCTGCCATGAAGCCATCACGGTGGCTACTATGAGCCGGTTATAAGGCAGTGCCTCTTCCCTAAGGACCTAAGCCAGCCCCTGGAGAGTCGTTTGGATAACATGGTTCTGCTTGGGGGCTGTGTAAAGGGTAGCCTGGGGTTGTGAGGAGTACCCACCTCTGGGTGGCCTTCACTGTGTCCTGGCCTAGGCTCTTCAGCTCCCTCCATGTCCTCCACCCCTAGCAGGGCATACACTTTAAAGCTTCTGCCCCTCCTCACGTGCTCACCCTCCTCCGGCCTTGGAAGACCCTCCCCTAATATCCATGAAACCTCTTATGTCTCCCAAGACATGGACCTGTGTCTTCTCTGTGATCTGATCCTATAGCACACAGTTGTCCACCTGCAGGTCCCCACTTCCTGCTGCCACATGGGTCTGACCAACAGTCCTGGCCTCCTGTCTGGCTTTGCTCCTAGGAGGCCTCAACTTCTGTGTGTTTTCTGCCTGTGCTGGTCAGATAGTGGCCTTGCCGTGATGCCTCTGGTTCTGGCCCCGCAG
Seq C2 exon
CTCTTCGACCGGCACCTGTGTGTACGCCAGCTGCGCTATTCGGGCATGATGGAGACTATCCGCATCCGCCACGCAGGCTACCCCATTCGCTACAGCTTTGTGGAGTTTGTGGAGCGCTACCGCGTGCTGCTGCCTGGGGTGAAACCAGCATACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGAGACCAGGAAGCG
R:
GCTTGTATGCTGGTTTCACCC
Band lengths:
294-2045
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]