DreINT0101077 @ danRer10
Intron Retention
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22248545-22249018:+
Coord C1 exon
chr21:22248545-22248745
Coord A exon
chr21:22248746-22248841
Coord C2 exon
chr21:22248842-22249018
Length
96 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGC
5' ss Score
5.2
3' ss Seq
TGTATCATATGTGTTTTTAGGCT
3' ss Score
8.81
Exon sequences
Seq C1 exon
GATCTAGAGAATGCTCCAAAACAGTTTAAGGAAGTCATTGATGAGCCTCTTCCACTTCCTGACGATGAAGAGGAGGACCTATCGGAGTATAAGTTTGCAAAGTTTGCTGCAACCTACTTCCAGGGAAATGCAACACACATGTATGTACGCCGGCCACTGAAACAGCCTCTTTTGTTTCATGAAGATGAAGGAGATCAGCTA
Seq A exon
GTAAGCATTTATTTATTTATTAGTCATCTCTATGCTTACCTGCTTACTGTAAAATAGGATTAAAAGCTGCATTGACTGTATCATATGTGTTTTTAG
Seq C2 exon
GCTGCTCTGGCTGTGTGGATCACTGTGTTGAGGTTTATGGGAGATCTTCCAGAACCCAAATATCATATCAGTATTAGTGATGGCAGTGAGAAGATACCAGTTATGACTAAAATCTATGAGACGTTGGGAAAGAGAACCTACAAAAGGGAGCTGCAGGCCTTGCAGGTGGATGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632:ENSDART00000148019:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF125723=DUF3752=PD(24.2=47.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCTCTTCCACTTCCTGA
R:
GATCCACACAGCCAGAGCAG
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]