DreINT0103415 @ danRer10
Intron Retention
Gene
ENSDARG00000032630 | neb
Description
nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
Coordinates
chr9:22994269-22995283:-
Coord C1 exon
chr9:22995180-22995283
Coord A exon
chr9:22995090-22995179
Coord C2 exon
chr9:22994269-22995089
Length
90 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGA
5' ss Score
4.36
3' ss Seq
CCTCTCTTTGTCCTGAACAGAAA
3' ss Score
9.45
Exon sequences
Seq C1 exon
GATACACACAGACCAAGACCATTGAGGTTCAGCAGAGATCTTCCTCAGTGGCAACACAACAGACCACAGTTTCTTCTGTCCCCTCACATCCATCAACCACTGGA
Seq A exon
GTAAGAGCGAGAGACGGTTGACTTTTTCAGTGGCAGATACTAAACTCTATGATGGATTTGGTTTAACACTCCTCTCTTTGTCCTGAACAG
Seq C2 exon
AAAACTGTGCGTGCCATGTATGACTACGCCGCTGCAGACAGTGACGAGGTGTCCTTCAAGGACGGTGATGTCATCGTGAACGTTCAGTCCATCGACGAGGGTTGGATGTACGGCACTGTGCAACGTACCGGGAAGACCGGCATGCTGCCTGCCAACTATGTGGAAGCCATCTAAATACATCTCCTGACACTTCCTGTGTCATATCCACTGACAGGAAGCAAAGCCTTATAATGTTAGACGTAGTCACTCTATTGTTTGTCCTTGTTACTGTTATGGAATTGCGTTTGTGCCCGTGTCACAAGCTCTATTGTGGTTGTGGCACGAGAAACTGATTAACTATATATATATACACACCTATTTAAGTCACAGACAATTGTATTTATCTTTTTTTGTTCTATTCTAACCGTTAAGTGACTTGAGCCCATTATTTTTGTATATTGCAATCACACTACATTCAACAAAGGCCATTCTGAAAGTTTTAGCTTTGAAACTTCTGCACAATGACAGATGGGCTCATGGTTCACTTTATATGTGAAAGGAAAACCTGAAACTCAGCGTTTTATAAAAACCGAACTGAGGCACTAAAGTTGCCGTGTGAAAATGAAGAAAAAAAACATCCTGAGGAAAACATTGAGGACAGGCCATCAGTTCCTCTAAAGAGAAAAACGTATTCATTGAAAAACAAGCCTCCTCCCTCCCTTGCTGAAGGCTGGCCATTATTTGCATGTGTGTTTTGTTTCTTGGATTCTGTAGGTGTTGGGTTAAGGGAAGATGTGTACCTTGAATCACTAGCTAATAAAGCACACCACGCTTCTGCAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032630:ENSDART00000143888:134
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.876 A=NA C2=0.108
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146041=SH3_9=WD(100=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGATCTTCCTCAGTGGC
R:
AACCCTCGTCGATGGACTGAA
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]