DreINT0104756 @ danRer10
Intron Retention
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20511512-20512375:-
Coord C1 exon
chr24:20512297-20512375
Coord A exon
chr24:20511587-20512296
Coord C2 exon
chr24:20511512-20511586
Length
710 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTCATTTTGCTTTCTCCTAGTTG
3' ss Score
8.37
Exon sequences
Seq C1 exon
GAAGCCCACTCTGTGGAAAAAATGGGGGTGAAAGATCGCCCTCAGTGCTATTTTGACGTGGAAATCAACAGAGAACCAG
Seq A exon
GTAAGATTTGACATTCATTAATAGTAAGCTGATCTCTGAACTGTTTTAAAGTGAGCTATAGAAATTAACTTTTGCAAGCATTTTGCTTCAAAGTTGCAAGTGTATAAAAAAGGTTCAGAGTTGCATGATCTGTAATTATCATTTTGTGTGAACTGAAACTTTGAAGTCAAGGAATTTGGATGTAAAATGAATACTCTAACCAGCTAAATATGAATGCATTTAATACGAAAGTGAAACATTATATGTGCTTGTTTTGTAACATGTGAAAGGCTGTTGTGGCAGTCCACAGACTCCACACCCTAACCTGCAGCTCTGTTTTAATGAACCCCAGACATTGTGTGTGCTAAATAATGTCTGCATTTCACCTCAGTCTACCAGTAATGATGTGTTTTAAGAGAGACGTCTGTGCCATAAAGCCAGGAGTGCTTATTTAGTAATTTTACACCTGTAATTTTACTAAGCAAATGTTTTAACACCATTTATGTTTTATCACATGTGAATGAATTAGAGAGCCTTCTAATTTTAGTTTTTATCCAAAACCTATGCAAAAACACACTTCCAGTTGACTGACCTGGTATTTGAATATGAAGGAGGTGTTGCTGCTTGTCACACTAAACTCACACTTTTAAGATGAATTAGTCACAGTATTCTAATATTAGGTTTTATCATATTTCATCTCAAATATAATCATTCATTTTGCTTTCTCCTAG
Seq C2 exon
TTGGACGAATTGTCTTTCAACTGTTCTCCGATATTTGTCCCAAGACAAGTAAAAATTTCCTTTGCCTGTGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097:ENSDART00000127923:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PU(10.6=50.0)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(26.6=100),PF132061=VSG_B=PU(27.3=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]