DreINT0108711 @ danRer10
Intron Retention
Gene
ENSDARG00000053487 | osbp2
Description
oxysterol binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-091113-18]
Coordinates
chr10:7962086-7963659:-
Coord C1 exon
chr10:7963475-7963659
Coord A exon
chr10:7962307-7963474
Coord C2 exon
chr10:7962086-7962306
Length
1168 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGA
5' ss Score
3.61
3' ss Seq
GTCCTGTTCTGTGAGTCCAGTGA
3' ss Score
-0.44
Exon sequences
Seq C1 exon
GTCACAGGCGTTGTGACGGATGGTGAAGGCAGCGCACACTACATTCTCTCCGGAACGTGGGATGAGAAAATGGAGAGTGCAAAGATCATAGAGAGCAGCCACGCCTGTGGAGGATCTGAAGGCAAACAGAAAACTGTCTATCAGACTCTCCCACCAAAACTACTGTGGAAGAAATACCCTCTCCC
Seq A exon
GTGAGAATCAATCAATCAATCAATCAATTAATCTGTCTGTCTGTCTGTCTGTCTGTCTGACTTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGTCTATTTGTCCATCCATCTATCTATGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCTATCTATCTATGTGTCTGTCTGTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTGTCTATCTATCTGTCTATCTATCTATCTGTCAGTCTGTCTGTCTGTCTATCTATCTATCTGTCCACCCATTTATCTATGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCAGTCTGTCTGTCTGTCTATCTATCTATCTGTCCACCCATTTATCTATGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTATCTATCTGTCTATTTGTCCATCCATCTATCTATGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATCTGTCTGTCTATCTATCTATGTGTCTGTCTGTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTATCTATCTATCTGTCTATCTATCTGTCTATCTATCTATCTGTCAGTCTGTCTGTCTGTCTATCTATCTATCTGTCCACCCATTTATCTATGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATGTTTATGTCTGTCTATGTATGTACGTATGTTTGTATGCATATGTATGTAATCTATGTATGTATGTATGTATGTATGTATGTGTCTGTCTGTATATCATTTGTCTGTCAATCAATCAAAACAATCCGTTTGTTGTGTGTTAAGTAAACTCCTCTTTCTGTACTCTCCTTTGTCCTGTTCTGTGAGTCCAG
Seq C2 exon
TGAGAATGCAGAGAACATGTATTACTTCTCTTCTCTGGCGTTGACTTTGAATGAGCTGGAGGACGGTATAGCCCCCACTGACAGCCGTCTGCGGCCAGACCAGCGGCTGATGGAGGCTGGGTTGTGGGATGAAGCGAACACCGAGAAACAGCGTCTGGAGGAGCGTCAGAGACTAGAAAGAAGGAAGAGAGATGCACAGGCCAACCTCGCACTCGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053487:ENSDART00000147368:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=0.473
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(16.1=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACACTACATTCTCTCCGG
R:
GTTGGCCTGTGCATCTCTCTT
Band lengths:
358-1526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]