MmuINT0113589 @ mm10
Intron Retention
Gene
ENSMUSG00000020435 | Osbp2
Description
oxysterol binding protein 2 [Source:MGI Symbol;Acc:MGI:1921559]
Coordinates
chr11:3705389-3711869:-
Coord C1 exon
chr11:3711694-3711869
Coord A exon
chr11:3705616-3711693
Coord C2 exon
chr11:3705389-3705615
Length
6078 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CCGCCGCATCATCGCCACAGGGA
3' ss Score
6.54
Exon sequences
Seq C1 exon
GTGACTGGAGTGGTGAGTGACAGCCAGGGCAAGGCCCACTACGTGCTGTCAGGTTCGTGGGATGACCAGATGGAATGTTCTAAGATTGTGCACAGCAGCCCCAGCTCTGATGGGAGACAGAAAACCGTGTACCAGACACTGCCCGCCAAACTGCTCTGGAGGAAATACCCACTGCC
Seq A exon
GTGAGTCAGGGTGGGGCTCCCGCAGTCTGTGGGGGAATAGGGACCAAGAGAGAGGCAGAGAAGAGGGCAGGGAAGAGACTGGCAGAGGGTCACCCCTACCCCACCCGGCAGAAAGCATGGAATCTAGCAGAGATCAGGGTCAGGAGGCTGCCGTCCCAGTGCAGACAGTGGCCGCCCAACAGCTCATGGGTGTGAAGACAGTCATGGCAGCAAACGCTGTGAAGATACTCTGAGCAAGTGGCAGGTTAGAGTTCTTCCCTGCAATGCCACAAGTAATAAAATGGAGCAAAACAATGACTCACAGGAAACCAAGTGAGAAACTCAAAGTGAAGAAAAGAAAAAAATCTACGACGGCGAAATGACTGAAATTGAGGATCCACAGCAAGGTTCCATAAACCAAATGTGGTCTCAGGATACAGGTTGGAAGGAAGGTGTTGCAGCCTAAATGCAAACTCCAGGGGTACCTGCAACTCCAGCACTCAGAAGTTAGAGCCAGGAGGGTTACAAGTTTGGGGCCAGCCTGAGCTAAACAGAGAGACAGCCTGAGCTGCATAGCAGAACAGCCTGAGCTACCTAGTGAGATAGCCTGAGCTACATAGTGAGACTCTGTGTCAAGAAGCTAAAAGAGAGAATTAAAGTGGGAAGGCCTACTCCTTGGTCAACCCAATGAGTCCCAGAGTACCCCCTGAAAGTGTGTGCAGAATTCACCCTGGACTCCCTGAGCAGGTCCTCAGCTGCATAAGGTCCACAGCAAGGCTGGGAGCTGTATCTAGCTGGCCCATGCTTCTAGCCCAAGGTCACAGAAGGAGACAGATACTGCTGGAGAGAAAACAGCAGAGAACATTCTACATCTATTTAAGTAGTCAGTTTTTCCAGCTTCTGGTTATGTCAGGTTGACCCGGGACTTGCTATATAGCTCAAGCTTCAAATTTACAATCCTCCTGCTTCAACCTCCCAAGGGCTGGGCTTTCAGTCATGTACCACTGTGCCTGGCCCCAAGCAGCTAGATTCTTAGAAAGAGACTACTTGTTGAAATCCTGCACCCCAGCAGCTGTCTTCAGCGATATCCGGAGCCTAAAGTCAGCCAGATGGCATCTTTCAGGTGCTGACAGACTGGCATTACCGATGACTGGCGAGGAGGGATACAGCCATCCCTTGGTAACCACCAAGCCAACGAGCTTTCCTGGACTCACGGGAGGAAAGAAGCAAATAAAAATAGGAAGGAGGCAGAATAGATTAACAACGAAGCCAAGAGATGCTCAGCGAGGATGGAGGCGCGGCTCAGTGGCGGCGCCAGCTGTTCAGCATACACAAGCACGTGTTCAGTTCCAGTGCAAAAGATAAGACAAGCTCCAGATTAAAAGCCTGGAGATGAAGACAGCGTCTATAAAATGAATGGTAATGGAAAGATAAAGACAATGTTCATTTAGAACTTGCTATAGTCAAAACAGCCGAAGGCAGGACAATCGTCAGTTCAAGGCCAGCCTGAATTACAAGCCTTGTTTCAGAAAAAAAAGAAGGCAGAAGGCAGTGTTTCAAGGTATTTTAAATGTCTTCTATTTTATATATGGATGTGTCCTGCATACGTATGTATGCACCATCTGCAAGCAGGTGCCCTAAGAGGCCAGGAAGGGGTGTCATATCACTTGGGACTGGGAAGTTACAGGTGGTCATGAGTTGCCATGTGGGAGCTGGAATTGAACTCGGTCCTTTGGAAGAACAGCCAGCGCTCTTGCACATTGAACTATAGCTCCAGCCCCTCAATTTATTTTAAACAATAAGGAACCCAGGACATTTGGAAGGCCAGAGAAAAGACTCGGGACTTGGAGATTGCAGTAGAATGGAATAGTGTCCCTTAGAGACTGTCTGGTGCCTACAGAGTGTCCCTTAGAGGTTTATGGGTCTCTGAAACATGACAGAGGCACATCAGATCCTGTGGAAAGAGAAGACTAAAAGTTTGTGCCAGAATGGTCATCCCACAAGGAAAAAGATCAACCAATGCTCCCCACACACACACATAGTGCTCCCCCCCCACAGTGCTCACACACACACAGTACTCCCCCCATACACACACATAGTGCTCCCCCCACAGTGTTCTCTCTTTCACACACACACACACACACACACACACCTTGCATTATAAGAGAAGTAACTCCAGATGGCCTCTCCCAGTGAGATCAAGTCTCCTGACTGCTAAGAAATAATTCACACTCTGAATGTGAAACTACTATCCCTTATGAAAATGTATCTTTACACACACACACACACACACACACACACACACACACACACACACACAAAGGACAGGATGCTGATGCAGTAAGCCTACCAGAGTACTTTTGTTCATTTTTCTCATTAAAAGATACTTGTCAGGAAGATACTCAGGAAATAGAGACAGAGCGACAGGAAGTTTATGGCCATCTGCTACACAGTGAATTGGAGGTCAGCCTCAGCTACATAAGACTCTGCCTCAAAAAAACAAGGGAAAAAAGCATGAAGAAAGGGTACATGAACAGAGGGAGCAGGCCCACAGTACCTGCACCTGGCAGAGAGTTACTACTAAGAACAAAAACAGAGCATTGTGATACAGCCTTTAATCCCAGCAACTCAGGAGATGGGAACTCTTAAGTTTGAGGCCAACCTGATCTGCTGGCCAGGTAGTGCCAGCTAGAGATGACACCATGATGTCTCTGTGAAGGGACAGTTTATTCCTGACACCATGATGTGTCTCTGTGATGTATCAGCTTATTCCTGATACCATGTGTCTGTGAAGGGACAGCTTATAGAAGGAAGCATTTCACTGGGGGCTTGGTTTACAGTTCTAGGTTAGTCCATTATCATTGTGGCAGGGAACATGGCAGTGTGGAGGAAGGCACTGGAACAATTGCTAGGAGCTATATCCTGATCTTCAGGGAGCGAGGAGAAAAGAGTAGGAGAGGAAGATAGACTCAACCTAGCTTGCACTTTTGAAACCTCAGCCCACCCCCAGAGACACACTTTCTCCAACAAGTCCACACCTCCTAATCCTTCCCAGACAGTTCCACCAACTGGGGCCAAACATCAAACACAAGCCTACGCATGGGAGCATTTTCATTCAAAACACCATATGTCTACTGTTTAAAAACAAACAGACGACAAAACAAACAAGACCCCAACTAACTAATAAATATTTTTTAAAAGGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGACGGACGGACAGACGGACAGACGGACGAACCAGGGGCTGGATACCAGGGTGCTTACCTGACCTATGTAACAAGACCCTGTTTCAAAACAAAGAACACAAAGAGGAAAGAGGGCTAGAGTTACAGCTTGAGTCAGTGATAAAGTGTAATTAGCATTTAAGAGGTCCTGGGCCTAATCCCTAGCACCCAAAATAAGAGTATTTTATCATGAACATAATTTAAGAGGGGGAGCAGTAGCTCGCAGCTATAATACCAGTATCCTGGAGGCAGAGGTGGGCAGGTCAAGCCAACCCGAGCTACAGAATGAGATGCTGTCCCCCAAAATAAAAACAAACTAGGAGCTAGAAAGGTGTCTCAGAGTGCTCTCTGCTCTTGCAGACGGCTTGAATCCACTTCACAGGACCTGTGTCAGTGGCTCACAGCACCAGGGGAGCTGATACCTTCCTCTGGCTCCCTTGGGCATCTGTTCTCACATATGCAGGAACTCACACGCAGATATACACTTTTTAAAAAATAGAAATAATAATTCAAAATTAACACATAAATAACCTTGGTTCAACAAACATAGCAAAATTAACCTAATGGGGAAATACACCAGAGCAGTGGCTAGAATTTCACAGCAGACCGTCTGACTGGTGTGAAAAACCATCACACAGGTCGGTGAACGCAGCTCCGAGGCAGAGTTCTGGCCCAGTGCACACCAAGAGCCACAGCAAAGCAGCTTTTTTAAAAAAGCCTAATACAGGCCGGTGTGGTGGTGCACACCTTTAATCCCAGCACTCCAAAGGCAGAAAGGCAGGAGGATGTTTGTGAGTTCAAGGCTAGCCTGGTCTACCTAGTGAGTTCCAGGACAGCGAGGGCTCTGTAGAGAGACCCTGTGTCAAAAAAAATAAATACTCCTAACTGGGAGCCCAAAGCGCCACAGGCACCATTTTGCATTCATTTGATTAGCAAATGAACACCTCTTTTAAGCATTTTCCAAGGGGCATGTAGAGCCGATCTGGAACAAGCCCGACCTTATGTCTTGAACACCACCCTCACCCCACCCTACCCCACCCTGAAGGCTAGTTTCCTGTAGATAGAGAAAAGAACCTGAAGTCCAAAGAAGGACACAGCAAGCAAAAGGAAACAGATGTCAGAGTTAAGCCCGACCTCTGGATCCCTCCCACATGACACTGAGTGGACACGTCACACAGCCCTGTGTTCTGTCACCTTAGGCTGTGCTGAAGATATAGCTGAATACATGTTTCCTTCAGCCGTAAGAACCATCCCCAAGACAGCGTGTTATATACACACAGCGCTCCAAAGTCCCCGGCACTCTGGATGAGGGTGCAGCCTGACATGTTAAGTGCTTCAGTCTAGGTATAAAGTCAGGAGAAGTTTTAAAATTCCCAACTAATTACAAAACATGTATCTGGAGGAAGAAAGTAAGAAGTGGGGCTGAAGAGATGGCTCAGCGAATTAAAAGTACTGACTGTTCCTTTAGAAGACAAGGATTCGATTCCCAGCACCCACATGGCAGCTCACAACTGTAACTCCAGTTCCAGGGGATTCATGGCACCAGCCATGCATATGATGTGTGTGTGTGTGTGTGCGCGCGCGTGCGCATATACATGCAAGCAAAATACCCATATACATAAAGTAATTTTTTAAAATTTCAACTAAAAGGATGTAAGGGTCTGTCCACAGAAACACTAACCAAGCAACTCCCCGCCTCCCTCCCCCCCCCACATCCCAGAGCTGGAGGATGTCACAGAACAAACTACAGCAAAATTTAATAACCAAGGCGGGGAGCACCGATGGATGGTGAGGACCGCAGTGGTCCCTAGGCACTCGAGGTTCCTATTTACCTTGCAACCTAATAGCACAGCTTCAATGTGCAGATAGCATGGGCTGATAGATAAAAAGAACGGGGCCACTGTACAATCAACATGGGACATTTTGATATGCTGCTCTGAATTGTGAGAAGGAAAACATATAAGAGCAAGGGTTTCAAGTCTGAACAGCAGAAATCACTAGTTAGCCCTAGAACACTGCCGCCCAGCTGCGGCAAACCCACACAGGCCATATGCAACTGGTCCATAGGCTGGACCACTAGACACATTTCAGAGCAATTATGCTAGAGGAAAAGGAAAAAAAAAAAGACTGAAGAAGAAAACAAAAAACAAAACCCATGGTTATCCAGTCATGAAATATGCTTCAAACTAATCGGTAGGGCAGAGAAAACATTATGAAAGCCAGTCAGCCAATGGACCTTGAATGATCACTGGACCTTGCTTGGTAAGCGCTGGGACTCGGCTAAAGTCATAAGTGGAGTGATTGACATGCAGCTTTGAAATGCCGATCACATCAGAAAAACATGAAACAAAAACAGTGAGCTAAGTATCTATCTCGAGTCAGAAAACAAATAAAAGAACCAGTTCCAGTCAGTAGGAGGGAATATTGTGCATAATAAAGCAGAAAACCCTAAAGAAGGATGTAGTTTTATTTCCAACCAATAAACACACAGGCAGCTCCAACCTGGGTGTTCAATATAGGCAAGGCGCTGCAGCCAACATGCTATGCCTGGCGCTCAGCAAACCAGATTAGCAGGGGAAAACCTTATGAGACGCAGATGAAAAGGACAAATCCCCAGAGAAGTTCTGTGTAGAGAAGCTGTGGGTGGGTGAGAGTGTACCAGGTGAGGGAGCGTTCCACCCAGCTGATGGGCTCTCCAGGCTGGGTTCCTGAAGGATGAGCAGGAGCCCGTTAGGGAAGGGTCCACCTGGGTCGCTCACGACCGCCGCATCATCGCCACAG
Seq C2 exon
GGAGAATGCGGAGAACATGTACTATTTCTCCGAGCTAGCCCTGACCCTCAACGAGCAGGAGGACGGCGTGGCGCCCACCGACAGTCGCCTGCGGCCAGACCAGCGGCTTATGGAGAGGGGACGCTGGGACGAGGCCAACACCGAGAAGCAACGGCTGGAGGAGAAGCAGCGCCTGTCCAGGCGACGGCGGCTGGAGTCATGCACGGCAGGCTGCGGTGGGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020435:ENSMUST00000070552:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.519
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(15.4=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types