RnoINT0105691 @ rn6
Intron Retention
Gene
ENSRNOG00000019645 | Osbp2
Description
oxysterol binding protein 2 [Source:RGD Symbol;Acc:1310505]
Coordinates
chr14:83945718-83951673:-
Coord C1 exon
chr14:83951498-83951673
Coord A exon
chr14:83945945-83951497
Coord C2 exon
chr14:83945718-83945944
Length
5553 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CCACCGCCTCACCGCCACAGGGA
3' ss Score
6.78
Exon sequences
Seq C1 exon
GTGACTGGAGTGGTGAGCGACAGCCAGGGCAAGGCCCACTACGTGCTGTCAGGTTCCTGGGATGAGCAGATGGAGTGTTCTAAGATTGTGCACAGCAGCCCCAGCTCTGATGGGAAGCAGAAAACCGTGTACCAGACGCTGCCAGCCAAGCTGCTATGGAGGAAATACCCACTGCC
Seq A exon
GTGAGTCAGGGTGGGGCGCCATCTTTGGGGGATAAGGGGGCCAAGACAGAGGCAGAGAAGAGGGCAGGGAAGAGACTGGCATAGGATTCCCCTCACCCCACCTATCTAGCAGAGAACAGGGTCAGGATGCTGCCATCCCAGTGCCAACAGTGGCAGCCCAACAGCTCATGGGCATGAAGACAGTCAGTGGCAGCAAATGCTGTGTAGACACTCTGAGCAAAGTGACCGAGTAGAGTTCTTCCCTGCAACGAATGCCACAAGAAAAAAAGCCAAGCTTGACAACAAATCACAGGAAACTGAGCGAGAAACTTACAGCAAAGACAAAAGAGAGAAACCTATGGAGGAAAAAATGGCTGAAATTGAGGATCCACAGCAAGGTTCAGTAGAGCAAATATGGCCTCGGGATACAGGTTGGAAGAAAGGCATTGCAGCATAAATGGGAACTTTGGGGATACCTGCAACTCTAGCACTCAGAAGTTGGAGCCGAAGGGTTCTAAGTTTGGGGCCAGCCTGAGCTGCATAGTGAAACAGCATGAGCCTGCGTAGTGAGTGAGATAGCCTGTACTCCATGGTGAGACTCTGGGTCAAGAAGCCAAAAGAGAGAGGTAAAATGGGAAGGCCTACACGTTGGTCACCACAAGTGAGTCCCAGAGCACTTCCTGAAAGTGTGTGTAGAATTCACCCCTAGACTCCCTGAGCAGTCCTCAGCTGCATAAGGTCCACAGCAAGGCCGGGAGCTGTATCTAGCTGCTGTGCTTCTAGCCCAGGGTCCCAGAAGGAAATGGGTACTGCTGGAGAGAGGGTGTTCTACGTCTATTAAAGTAGCCAGTCTCTCCTGCTACAGGTCATGTCAGGTTGGCCCAGGAATTGCTATGTAGCCCAAACCTCAAATTTGCAATCCTCCTGCTTCAACATCCCAAGAGCTGGGATTTCAGTCATGTACCACTGTGCCTGGCCCCAAACCGCCAGATTCTTAGAAAGCTATTACTTGTTGAAATCCTGCACCCCAACAGCTGTCTTCAGCAATATCGGGAGCCTTCCAGGTGCTGACAGACTGGCATTACCAATGACAGGAAGAGGAGGAATACAGCCATCCCTCGGTAACCAGCAAACCAAGTTTTCCAGGAGGAAAGAAGCAAATAAAAGTGGAAAGGAGGCAGAATAGGTTAACAATGAAAGCTGCTCACTGAGGATGGAGGCGTGACTTAATGGCAGAGCCCCAGTGCTCAGCATACACAAGCACTGAGTGCTAGCACAGAAGACAAGATCCCACATTAAAAGTCAGGAGAGGAAGAAAGACCTCGGGTCAAGAGAATCTATAGACTGAATGGTAAAGTTAAAGATAATGTTCATTTAGAACTTACTATAGTCAAAACAGTCAAAGGCAAGAGGATCAGCAGTTCAAGGCCAGCCTGAGCTACAAACCTTACCTCAGAAAAAAAAAGAAGGCAGCGTTTCAAGGTATTTTAAATGTCTTCTATTTTATGTATGAATGTGTGCTGCATATGTATGTATGCAACATCTTGCATGCAGGTGCCCTAAGAGGGCAGAAAGGGGTGTCCTATCACTTGGGACTGGGGAGTTACAGGTGGTCACGAGCTGCCATGTGAGTGCTGGGTCCTCTGGAAGAGCAGCCAGTGCTCTTATCCATTGAACTATAGCACCAGCCCCTCAGTTTATTTTAAACAGTGAGAGCCCAGGACATATTGAAGGCCAGAGGAAAGACCTATCCTAAGCCTTGGGACATGGAGATTGCAGGAGGATGGAAAAGTGATTGGCCTAGAGATTGTCTAGTGCCTGGAGCCCCTCAGAGGTTTATGGATCTGTACAGAGCAGAGGCACAGCAGATCCCGTGGATAAGACTTAAAGAGTCTGGGGCAGAATGGTCGTCCCACTAGGAAAAAGATCAACCAGTGCCTCCCTCCCTCCTACACACACCTCGCTTTGTAAGAGAAGAAATGCCAGACGGCCTCTCCAGTGAGATCAAGTCTCCTGACTGTTAAGAAATAATTCACACTCTGAATGTGAAACTACACATGACTGACTACCTTCTATCCCTTATGAGAATGATTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACACACACACACTCTCAGGTAGTAGAGACAGGGCCATAGGAAGTTTATGGCCAGCTGATACACAGTGAATTGAGGCCAGCCTCAGCTACATAAGACCCTGCCTCAAAAAGAGAGGGAAAAAAGCATGAAGAAAGGGTACACGAAGAGAGAGAGGGAGCGCACCCACAGTCCCTGTTCTTAGCAAAGGGTTACTACTAAGAACCAAGACAGAATGTTTGATATAGCCTTTAATCCCAGCAACTCAGGAGGCAGAGGCAGAGGAGTTCAGAGTTCAAGGCCAGCCTGATCGCTGCCTAGGCTCCTAGCCATTAGAAATACAGAGTAAGATCCTGTTAGTTTCTGTTCTATTCTTGTTAAGAGACAAAACCATGATGTGTCTCTGTGAAGAGACAACCTATAAAAGCAATCATTTTACTGGGGGCTTGGTTAGTTCATTATCATCGTGGCAGGAAACATGTTAGCTCGGAGGCAGGCACTGAAACAGTTGCTAAGAACTGTATCCTGATCTGCAGGGAGCAAGGATGGGGAGAGAGGGGAAAAAAGTGGGAGAGGAAGATAGACTCCACCTAGCCTAAGCTAAGTCCACCCCCAGAGACACACTTCCTCCAATGAGTCCACATTTCCTAATCCTCCCCAGACACCAACTGGGTACCAAACATTCAAACACAAGCCTTTGCATGGGGACATTCTTACTTAAACTACCATGAGTCTGTTTTCTAAAAATGAACAGACAGACAACAAAACAAAACAAGCCCTCAACTAACCAAATAAATATTGAAGGAAAGAAAGAAAGGAAGGAAAGAAGGAAGGGCTGGGTGCCAGGGTGCTTACCTATGATTGGAGGACAGAGGGGGCTGAGGCATGAAGGTCTTGAGTTCAGGGGCAGCCTGGCCTATGCAACAAGACCCTGTCTCAAAAAAGAAAAAAGACAGAAAGAGGAAAGAGGGCTAGATTACAGCTCAAGTCAGTGATGGAGTATGGTTAGCATTTATGAGGTCCTGGGCTGAATCCCTAGCATCCAAATTAAGATTATTTTATCATGAAAAGAATTTAAGAGGGGAGTGGTAGCTCACAGCTATAACCCCAGCATCCTAGAGGTGGTGGTGGACAGGTCAAGCCAACCCAAGCTACAGAATGAGAGTCTGCCCCCCCCCAAAAAAAAACCTAGGAGCTAGAAAGGTATCTCAGAGGTTAAAAATGCTCTCTGCCCTTGCAGATGGCCTGAATTGGCTTCCTAGGACCTATGTCAGTGGCTCACTGTAACCCCAGCACCAGGGGATCTGATACCTCCTTCTGGCTCCCTTGGGTGTCTGCTCTCACATATGCAGGAACTCACAGCAGATAGACACTTTTTAAAAAAATAAATAAATAAAAGCAAAAATAATCCAACGGGGAAATGCGCGTCACAGCAGACCATGTGACTCCCTAGCTGTGAAAAACCACCACACAGGTCAGTGAAGGCAGCTGGGAGGCAGCGCTCTCACCTAGCATGCACCCAGAGCCCCAGCAAAGCGACCCTCTAAAAAGCCCAACACAGGCTGGGTGTGGTGGTTCACACCTTTGATCCCAGCACTCAGGCAAGGCCAGCCTGGTCCATACAATGAGTTCCTGGACAGCCAGGGCTCTGTGGAGAGACCCTGTGTCAAAATCAATAATCCTAACTGGGAACCCAGTGTACCACAAGGCGCCATTTTGTATTCATTTGATTAGCAAATGGAGGGGCCAGGCTTGGAGACTTTAACCTTCAGCTCTTAGGTTGAGCATCCTCACATTGGTTGAGCCAGCCTGGAACAAGCCAGACCTCATGTCTGGAAGAACACACCCCCACCTCCACCCCACCCCACCCCATGGGCCAGTCTCCTGTAGATAGGGAAACAGAGGTCACAGGGTTAAGCCCGAGGCATCAGTGTAGTGTCAGGAACCCAAACCCAGAGCTCTGAATCCTCCGGGACGCAGTGAGTGAACAACACACACAATACCGTGTTCTACCTGCTTTAGGCTGTACTTAAGATCGAGTCGAAACACACCTGCGTTTCCGGTTTAGCCTTAAGTCCCATCCCCTACATATCTCATTATATATGCACAGTGCTCCAAATTCCCCAGCATTCTGGATAAGGGTGCAGCCTGACGTGTTAAGTGCTTCAGTCTAGGTATAAAGCGGAGACAAGCTTTTCAATTCCCAACTAATCTACAAAATGTGTATCCTGAGGAAGAGAGTAAAGAATGGGGCTGGAGAGCTGGCTCGGCAGTTAAAAGCACTGGCTGTTCCTCTAGAGGACCAGGGTTCAATTCCCAGCACCCACATGGCAGTGCACAACTGTAATTCCAGTTCCAGGGGATTCGTGGTACCAGGCATGCATGTGGGGTGTGGGTGTGTGTTGCTCTGAATTGTGGGGAGGAAAACAAATAAAAGTGAAGGCTTTACATCTGAACAGCAAATACCACTAGTTAGCCATAGAATACTGTCGCCAGCTGCAGCAAACCCATGTGGGCCACATGCAACTTGTCCATAGGCTGGACTGCTGGACACATTTCAGAGTACTAAAAATGTACCAGCGGTATCTGACTCCAGAGCAATTATACTAGAGGAAGAAAAAAAGAAGAAGAAAACCAAAACCCATGGTTATCCATTCACAAAATATGCTTCAAACTGAGGTTGGGGATTTAGCTCAATGGTAAAGCACTTGCCTAGCAAGCGCAAGGCCCTGCGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAAATATGCTTCAAACTAATCGGTAGGGCAGAGAAAATATTATGAAAGCCAAAGACCATGAGTGATCACTGGACCTTGGTAAGCGCTTGGTAAGCGCTGCGACTCAGCTAATGCCATACTTGGAGTGATTGACGTGCAGTTTTGAAATGCGGATCACATCAGAAAAACACGAAATAAAAACTGTGCGCTAAGCATCTATCTCGAATCAGAAAACAAACGAAGAACCAGTTCCAGCCAGGTAGGAGGGAATGCTGTGCGTGATAAAGCAGAAAACCCTAAAGAAGGGCATCATTTTATCTCCAACCAATGAACATACAGGCATCTCCGACCGGGGTGCTCAACATAGGCAAGGTGCTGCAGCCAGCATGGCTATGCCTGACGCTCTGCAAAACAGAGTAGTAGGGGAAACCTTAACAAGACACGGATAAAAAGGACAAGGACAAGAGAGGTCCAGTGTAGAGAAGCAGTTGCGGGTGGATGTACCGGGTGAGGGCTGCAGAGGGCGTGTTCCACGCAGCTGGTGGGCTCTCCGGGCTGTGTTCCTAAAGGATGGGCCAGGAGCCCGCTAAGGGAGGGGCTACCCTTGTCGCTCACCACCGCCTCACCGCCACAG
Seq C2 exon
GGAGAACGCGGAGAACATGTACTATTTCTCGGAGCTGGCCCTGACCCTCAACGAGCAGGAGGAGGGCGTGGCGCCCACCGACAGCCGCCTGCGGCCGGACCAGCGGCTGATGGAGAGGGGCCGCTGGGACGAGGCCAACACCGAGAAGCAGCGCCTGGAGGAGAAGCAGCGCCTGAACCGGCGACGGCGGCTGGAGTCGTGCACGGCCGGCTGTGGCGGGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019645:ENSRNOT00000065501:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.545
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(15.4=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]