GgaINT0008018 @ galGal3
Intron Retention
Gene
ENSGALG00000007758 | F1NRB3_CHICK
Description
NA
Coordinates
chr15:11037952-11038724:-
Coord C1 exon
chr15:11038540-11038724
Coord A exon
chr15:11038173-11038539
Coord C2 exon
chr15:11037952-11038172
Length
367 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
TCGGGTCTGTCTGTCTGCAGGGA
3' ss Score
10.02
Exon sequences
Seq C1 exon
GTGACAGGGGTGGTGAGTGATGCTGATGGCAAAGCCCATTATGTCATGTCAGGCACGTGGGACGAGAAGATGGAGTGCTCCAAGATCGTGCAGAGCAGCCATGGCAGCGCCGGCTCAGAGGGCAAACAGAAAACTGTCTACCAGACACTGTCCCCAAAGGTCTTGTGGAAGAAGTACCCCCTCCC
Seq A exon
GTGAGTCCCGTCCTGTGGTGTTGCTTGCTGTGTGTCTGTCATGCTCCTTGGGTTGGGGTTTTGCTTTCCTGGCTGCTGGCTGTGGCAAGGAGTGTTGTCCCCATGCTGGCTTTGCTTTTAGCTTCTCCATACCAAACCAATGAATTCGTGCTTCTCCCCAAACCCCTGCAGGCATCACTTGCATCTCCTCTTAGCCTCCTGAAGGCACCATTTCCACTTACAGGGTGGGAGGCAGAGCTTCTTAAGGGTGGTTTTGGAGATCAGAATAATATAGCAGCTTTAGAGTGAGACACAAGCACATGGAGGGATGGAAGCCCTGTTTGAGGCAGGCACCTCTGTGGTCCTCATCGGGTCTGTCTGTCTGCAG
Seq C2 exon
GGAGAACGCCGAGAACATGTACTTCTTCTCCAGCCTGGCCCTCACCCTGAATGAGCCCGAGGAGCGCGTGGCCCCCACGGACAGCCGGCTGCGCCCCGACCAGAGGCTGATGGAGAGCGGCCGCTGGGATGAGGCCAATGTGGAGAAGCAGCGGCTGGAGGAGAAGCAGAGGGCTGTGCGCCGCAGGAGGGAGGCTGAGGCTGTGGAGGCCCTGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758:ENSGALT00000012578:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=NA C2=0.467
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(16.1=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTGAGTGATGCTGATGG
R:
CCTCTGCTTCTCCTCCAGCC
Band lengths:
349-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]