DreINT0108881 @ danRer10
Intron Retention
Gene
ENSDARG00000063730 | osbpl6
Description
oxysterol binding protein-like 6 [Source:ZFIN;Acc:ZDB-GENE-070912-206]
Coordinates
chr9:1419452-1422196:-
Coord C1 exon
chr9:1422093-1422196
Coord A exon
chr9:1419545-1422092
Coord C2 exon
chr9:1419452-1419544
Length
2548 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
3' ss Seq
TATGTGTCCATGTACTCTAGAGT
3' ss Score
6.65
Exon sequences
Seq C1 exon
AGCTCGCCTACTGCCAGTCCAGTCTTTTAGAGCTGAATCAACTTCTGCAGAGTCTGGAGATCTTACAGAGGACACAGTCAGCTCCCAACTTCACTGACATGCAG
Seq A exon
GTGCACACACACACACACACACACACACAGACGCATGCAGACAGACAACAGACACACTCACATACACAAACAAACAAACAGACACACACACAAGTGCACATGCAGACACAAACACACACATGTAACAGACAAACACACACATACACACATACATGCGCACACACACACATAGATACAGACACACGCAAACAGACACAATCACATATAGATAAAAGACAACATGCGCACACACACACACACACACACACACACACACTAAGACAAACAGATTCACCCAAATACACACACAGACACAGTGTTAGCCCGGATCTCAGTATTGAGTAGTGTTTGTGGTGTGTCGTGCTGTATGTTAGCACAGATTGAGTTACAGACAGGTTGTGTTTCGCTTTGGCTGCATTTACACTGCAGACCTGCACAAGCCTGATGTCTCTGACGCACACACATACACACACACACACAGACCTGATGTTCTGTCTGATCTGTTTACATTGGTTCATCCTTTAGTTCCAGCTGTTCAAAATGGCGCTTCAGTGGTTTGTGCAAGTCAGAGAAAGTCTACACCTATTCTGCAAGACTCACTGACTATGAGCAGTTGTGCAAACCCTTAATCATAATATGACCTTACACCCTCATAATGATGAAGAAACACTTCTGGATTAGGAGAGACATGTGTTTGAGCTGTAATCTGACAGATATGAGGATTGTGGGAATATATATATATATATATATATATATATATATATATATATATATATAAATACACACTCACTGGCCACTTTATTAGTCCTTAGGCCTTAGTCCTTCACGGCAGAGATTCAACAAGCTACTGGAAATATTCCTCAGAGATTTTGCTCCATATTGACATGATAGCATCACACAGTTGCTGCAGATTTGTCGGCTGCACATCCATGATGCCAATCTCCCGTTCCACCACATCCCAAAGATGCTCTATTGGATTGAGCTCTGGTGACTGTGGAGGCCATTTGAGTACAGTGAACTCCTCGTCATGTTCAAGACACCAGTCTGTGATGATTGAGCTTTATGACATGCTGCGTTATCCTGCTGGAAGTAGCCATCAGAAGATGGAGACACTGTGCTCATAAAGGGATGGACATGGTCAGCAGCAATACTCAGGTAGGCTGTGGCGTTGATGCTCAATTGGTACTAATGGACCCATAGAAAATCTCCCCCACACCATTACACCACCACCACCAGCCTGAACCGCTGATACAAGGCAGGATGATCCATGCTTTCATGTTGTTGAGGCCAAATTCTGACCCGAGCATCTGAATGTGTCAGCAGAAATGGAGACTCATCAGAGCAGCAACGTTTCTCCAATCTTCTATTGTCCAGTTTTGGTGAGCCTGTGTGAATTGTAGCCTCAGTTTCCTGTTCTTAGCTGACAGGAGCGGCACCCGGTGTGGTCTTCTGCTGCTGTAGCCCATCCGCCTCAAGGTTGGACGTGTTGTGTGTTCAGAGATGCTCTTCTGCAGAGCTCGGTTGTAACGAGTGCTTATTTGAGTTACTGTTGCCTTTCTATCAGCTGGAACCAGTCTGGCCATTCTCCTCTGGCCTCTGGCATCAACAAGGCATTTGCGCCCACAGAACTGCCGCTCACTGGATATTTCCTCTTTGTATGAGCATTCTCTGTTAACCCTAGAGATGGTTGTGCGTGAAAATCCCCGTAGATCAGCAGTTTCTGAAATACTCAGAGCAGCCCGTCTGGCACCAAAAGCCATGTCATGTTCAAAGTCACTTAAATCCTCTTTCTTCCCCATTCTGATGCTCGATTTGAACTGCAGCAGATTGTCTTGACCATGTCTACATGCCGAAATGCATTGAGTTGCTGCCATGTGATTGGCTGATTAGAAAATTGCGTTAACAAGAAGTTGGACAGGTGTACCTAATAAAGGGGACGGCGAGTATTATACATATATATACTTCTTAAAGTCAGACCATACTGTCCTAATGAAATCATTCAAAATCAAGGCATGATCATATTTTATTGTGGTAAAATAAGCGTCATCTAGAGGCCTTTGCATTTTATATAAGATACTTCTGATACCAAATGATCAGCTAGAAGTATAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATTAAATGTATGTATCACACATGCAACTTTTATATTAGTTTTGATTAATCGTTTGACATCATTAGTTCATAATACTGTAGCACAGATTTAGACATCCTCAGCCTCAAGCTAAATTCAGCACCTCAGACACACACACCATCGTAATTTTTCCTTAAATTTCATTTCTATTTGCTCAGATGTCATTCTCATTACCTCTGCTCATATAATGAAGCCAGTGTACTCACCACACATTCACAACATCTCATCTTCTGCTGCTGACAGATTCAGTGCTTCACTTTCTGCTATTAACCCTCTCACCCCTTTGCTGTGTGTGTGTGCGTGTTTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATGTATGTGTCCATGTACTCTAG
Seq C2 exon
AGTAACTGTGTAGACTTGTCAAAGAAAGAAAAGCGCGTCAGCAGAAGATGGAGGACTAAAAGTGTCAGCAAAGATGCAAAATTGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063730:ENSDART00000124777:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]