HsaINT0118697 @ hg38
Intron Retention
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:178338991-178339764:+
Coord C1 exon
chr2:178338991-178339094
Coord A exon
chr2:178339095-178339671
Coord C2 exon
chr2:178339672-178339764
Length
577 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TAACTATTTGTGTAATGTAGGCT
3' ss Score
6.46
Exon sequences
Seq C1 exon
ATCTTGCACATTGCCAGTCAAACCTTGTGGAACTTAGCAAACTCCTGCAAAATTTGGAAATACTTCAGAGAACTCAGTCGGCACCTAACTTTACTGACATGCAG
Seq A exon
GTAAACATATTCCTGCTGCTGGTAAAAGGACTTAGGGTATTAATTAATACTCTTTATTGGGTTGTTCTATGAATATATAAGGTAACATTTAAAGATAAATAACTGCAATACAGACATTCATTTATATTCTGGAGTTATTTTTAATATTTTTGAATCTCAGTGTCAGTGTGTTAAGATGATTATTTTAAAACATTTTACATTTAAATACACACTAACCAAAAGAAATACATTCAGTATCTGAATTATTCTTCCATGTTTGTGTCCTATTAGAAATGGTAGCTTTGAAGATATGCTTTAGATACTCTCAGAATTATTATTGTCTTTTCATATAGAAATCAAAGCTAGAGATTTCTAATCCTGTATTCATTTTGTTTATCAGTAAAATATATTTTATAATTAAGTTCTTATCTCTGCTTTTTAATGCCCACTATTCGTCTAATATGCCTTTCTGTCCTGGCTGGTTTGCTTATAGGCTCTAACAATGACCTTTAGTAACTTGCTGTGCTCTTGTCTATATCTGTATCATCTGTGTGAACTTAATAATACTTTGTTGCTTTTAACTATTTGTGTAATGTAG
Seq C2 exon
GCTAACTGTGTAGATATTTCAAAGAAAGACAAGCGGGTCACAAGACGATGGAGAACAAAAAGTGTCAGCAAAGATACAAAAATACAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156:ENST00000190611:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.253
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACATTGCCAGTCAAACCT
R:
TGCAGTTGTATTTTTGTATCTTTGCT
Band lengths:
192-769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development