RnoINT0105826 @ rn6
Intron Retention
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63411344-63412294:+
Coord C1 exon
chr3:63411344-63411447
Coord A exon
chr3:63411448-63412201
Coord C2 exon
chr3:63412202-63412294
Length
754 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TAACTATTTGTGTAATGTAGGCT
3' ss Score
6.46
Exon sequences
Seq C1 exon
ATCTTGCACATTGCCAGTCAAACCTTGTGGAACTTAGCAAGCTCCTGCAGAACCTGGAGATACTTCAGAGAACTCAGTCGGCTCCTAACTTCACTGACATGCAG
Seq A exon
GTAAATGTAATGGCTGCTGGTAACACGATTTCAGATCCTAACTTCAAACCTTTACTGGACTGTCCTATGAATATGCAAGGTGACACTTAAAAGGAAGTTACTATTCCCAGGCTAACATTACGCTATTTATAATAATATGTAGTTGATATTCTGGGGCTACTTATTTAACGTGTATGCATGCTTTGCCTACTTGTATATGTGTGCACCGTATGTGTGCAGTGGCTGTGCAGTCCAGAAGAAGGCATTGGATTTCCCTAGGAGTCGTATTAGATGGCTGTGAGCTGCTTTGTGGGTGCTGGGAATCAAACCTGGGTCCTCTATAGGAACAATTGCTGAGCCGTGTCTCCAGCCCCCGTGGAATTATTTGTAATACTTTGAAGTTTGGTTTTACATTTAAATACATACAGACTCTTGCAAACATATTTGTGTCGATTCCCAGTTCTCTTTTGTGTTAACCATGACGGCTTTGAAGTTTAAGTTCTAGAACATTCAAGAAGTATAGCTGTCTTTAAAGTAGAAAAAAAAAAACAGTGCTCACAGCCTCTAATCTTGTTCTCATTTTTGCACACTAGAAATATAGCTTTCACAAGCGAGTTGTAGACGTCTTAGCTGTCAATGCCTTTCTCCTTTGGCTGGTTTGCTTTGGGGGTTCTAACGATTCCTTACTAACTTTCTGGGCTCTTTGTACTTAACGTGTTATCATCTGTGTGAACTTAATAATCCTTTGTTGCTTTTAACTATTTGTGTAATGTAG
Seq C2 exon
GCTAACTGTGTAGATATTTCAAAGAAAGACAAGCGGGTCACAAGACGCTGGAGGACAAAAAGTGTCAGCAAAGATACAAAAATACAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812:ENSRNOT00000068199:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.403
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACATTGCCAGTCAAACCT
R:
TGCAGTTGTATTTTTGTATCTTTGCT
Band lengths:
192-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]