HsaINT0118697 @ hg19
Intron Retention
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:16388]
Coordinates
chr2:179203718-179204491:+
Coord C1 exon
chr2:179203718-179203821
Coord A exon
chr2:179203822-179204398
Coord C2 exon
chr2:179204399-179204491
Length
577 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TAACTATTTGTGTAATGTAGGCT
3' ss Score
6.46
Exon sequences
Seq C1 exon
ATCTTGCACATTGCCAGTCAAACCTTGTGGAACTTAGCAAACTCCTGCAAAATTTGGAAATACTTCAGAGAACTCAGTCGGCACCTAACTTTACTGACATGCAG
Seq A exon
GTAAACATATTCCTGCTGCTGGTAAAAGGACTTAGGGTATTAATTAATACTCTTTATTGGGTTGTTCTATGAATATATAAGGTAACATTTAAAGATAAATAACTGCAATACAGACATTCATTTATATTCTGGAGTTATTTTTAATATTTTTGAATCTCAGTGTCAGTGTGTTAAGATGATTATTTTAAAACATTTTACATTTAAATACACACTAACCAAAAGAAATACATTCAGTATCTGAATTATTCTTCCATGTTTGTGTCCTATTAGAAATGGTAGCTTTGAAGATATGCTTTAGATACTCTCAGAATTATTATTGTCTTTTCATATAGAAATCAAAGCTAGAGATTTCTAATCCTGTATTCATTTTGTTTATCAGTAAAATATATTTTATAATTAAGTTCTTATCTCTGCTTTTTAATGCCCACTATTCGTCTAATATGCCTTTCTGTCCTGGCTGGTTTGCTTATAGGCTCTAACAATGACCTTTAGTAACTTGCTGTGCTCTTGTCTATATCTGTATCATCTGTGTGAACTTAATAATACTTTGTTGCTTTTAACTATTTGTGTAATGTAG
Seq C2 exon
GCTAACTGTGTAGATATTTCAAAGAAAGACAAGCGGGTCACAAGACGATGGAGAACAAAAAGTGTCAGCAAAGATACAAAAATACAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156-OSBPL6:NM_145739:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.323
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACATTGCCAGTCAAACCT
R:
TGCAGTTGTATTTTTGTATCTTTGCT
Band lengths:
192-769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)