DreINT0108898 @ danRer10
Intron Retention
Gene
ENSDARG00000012981 | osbpl7
Description
oxysterol binding protein-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-212]
Coordinates
chr12:28676847-28677087:-
Coord C1 exon
chr12:28677034-28677087
Coord A exon
chr12:28676961-28677033
Coord C2 exon
chr12:28676847-28676960
Length
73 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TTATTTATTTTTATCGACAGTTT
3' ss Score
8.48
Exon sequences
Seq C1 exon
AGATACTTTGTATTGGATAAAGGGATTCTACGATATACAAAAAATCAACATGAT
Seq A exon
GTGAGTATGTGATATTTGTTCATCCACTTGTTTTGGGCTCTTTTAACAATCCGTTATTTATTTTTATCGACAG
Seq C2 exon
TTTTCTAGAGGGAAAATGCATGGTTCACTGGATGTCAGCCTTGCAGTTATGTCCGTAAACAAAAAAGCGAGACGCATAGATCTGGATGCTGGAGACAATCTGTATCATTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012981:ENSDART00000020667:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.2=91.7)
A:
NA
C2:
PF154091=PH_8=FE(41.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTATTGGATAAAGGGATTCTACGA
R:
TCAAATGATACAGATTGTCTCCAGCA
Band lengths:
159-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]