RnoINT0105842 @ rn6
Intron Retention
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:84988010-84989384:+
Coord C1 exon
chr10:84988010-84988135
Coord A exon
chr10:84988136-84989270
Coord C2 exon
chr10:84989271-84989384
Length
1135 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
CCACCAACCCTCCACTCCAGATC
3' ss Score
7.14
Exon sequences
Seq C1 exon
GCCTCCGAGCTGTGGGAGGTGGTGGAGGAGCCTCGGGGCAGGCTGGGAGCAGAAGACATCATGCCTGAGAGACAGGAAGGACACCTGCTCAAGAAGAGGAAGTGGCCTCTTAAGGGCTGGCACAAG
Seq A exon
GTAGGGTGGCAGGGCAAGGGAGGAGCTACAAGAGGGAGGCTGCTGGACAGCCCTGGTGTTCCTGTGTGGAAAGGAGAAGAAAAACGGTGTGTGTTTGCTTTCTCTCCACCCGCTGTGTTCCTGGCTGCCTGCCTGGTCCTGCCCCTCTGGGACAGAGGTACTTTGTGCTCGAGGATGGGGTCCTTCACTACGCCACGACTCGACAAGATGTGAGTCAGGTTCCGGGCTTGGGATGTGGGGGGAGCCTGACCCAGGATGCTCTGAGCAGGTTGGGGGGTGTCTTGAGTTAGCCAGAGCAGGGTATGGATCTCACTCAGTTCCACCTCTCAGCAACCTCTGTCCAGATACAGTTGGCTTTCTGCATCCTTAGGCTCCACATCTGCAGATTCAACAATTTAAACACACACACACACACACACACACACACACACACACACACACACACCACCCATGCAAACTTTCAAAATCCGTCTGTACTAAACACATAGGTTTTCTCCTTGTTATGATTCCCTTAAACACTAGAACCGTGAGCCCATAGCATGCCCATTGCTTGCCATTAGGGATTAGAAGTCGTCTAGAAGTGCTTAAAGGACACACGGAGACCGTATATATAAGTTATGTGTAGAAGCTGTACCTTTTGCTATTAGAAATGAGCAGGTTTGCATTTTGGTTTCCTCTGTGGCCCCCTAGAACCCAAAACACCATGAGACAACTGCTTCCCTGGGACTCAGCCTCCTTCCTGCTGACACGGGGTGTGGGGCACACTCGGCCACCTGTAGAGCTATCAAATGATGCAAATTGAGTGCCCAAGAAATGGGGGCTTTGTCACCTTAGACCTTGTCCTCCTCTTGTGCTGGGAACAAGAAGCAAGGCTGGACTCTCAGGCTCCTTCCAGGGCGTGGTCCTTCCTCCTCCACATAGACTCCCAGGGGTGTTAGTATTTTTATGACCTCTCAGACCTGGGTGAAGCTGGACATAGCATAATGTTCTGTACCCATGAGGTGACGAAAAAGCCCCTCTGTATACGGCTCGAGGTGCTTGACCCTTGAATCTGGAGTGGCCTCCAGGAGATGATGACACTGTGCTCCAGAGATCCTCAAGCCATTCCCCTGTCCCCACCAACCCTCCACTCCAG
Seq C2 exon
ATCACCAAGGGGAAGGTTCATGGCTCCATCGATGTCCGGCTATCCGTCATGTCCATCAACAAAAAGGCCCAGCGCATTGACCTCGACACAGAAGACAACATTTACCACCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473:ENSRNOT00000067665:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(20.8=35.7)
A:
NA
C2:
PF154091=PH_8=FE(51.4=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGAGCTGTGGGAGGTG
R:
CTTTAGGTGGTAAATGTTGTCTTCTG
Band lengths:
238-1373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]