GgaINT1020426 @ galGal4
Intron Retention
Gene
ENSGALG00000028934 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr27:3903203-3903488:+
Coord C1 exon
chr27:3903203-3903325
Coord A exon
chr27:3903326-3903434
Coord C2 exon
chr27:3903435-3903488
Length
109 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
ACCTCTCTCTCTGTCCCCAGAGG
3' ss Score
13.23
Exon sequences
Seq C1 exon
GGCTCGGAGAGCTGGGAGGTGGTGGAGGAGCCACGAGCCCGGGGCAGCCCAGGCCGGGAGCCAGAGCGGCAGGAGGGCTACCTGCTCAAGAAGAGAAAGTGGCCCCTGAAAGGCTGGCACAAG
Seq A exon
GTAATGGGGTAATGGGGTAACGGGGTGCTGGGGCAGCATGCCCAGCCCTGTGCAGATTTGGACCTCTGCAATGGGGGCTGCGGGGATTCACCTCTCTCTCTGTCCCCAG
Seq C2 exon
AGGTACTTTGTGCTGGAAAATGGCATCCTGAAATACGCCACCACGCGCCAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028934:ENSGALT00000043335:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.683 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.7=36.6)
A:
NA
C2:
PF154091=PH_8=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCTGGGAGGTGGTGG
R:
CGTGGTGGCGTATTTCAGGAT
Band lengths:
162-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]