DreINT0108897 @ danRer10
Intron Retention
Gene
ENSDARG00000012981 | osbpl7
Description
oxysterol binding protein-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-212]
Coordinates
chr12:28677034-28677311:-
Coord C1 exon
chr12:28677168-28677311
Coord A exon
chr12:28677088-28677167
Coord C2 exon
chr12:28677034-28677087
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
AACGTTATGCTTTCTTACAGAGA
3' ss Score
8.25
Exon sequences
Seq C1 exon
AACGTTAAAGACTGGGAGGTAATGGACGATTGTCCAGCAGACTTGACCATAACTGCTGAAAACATTCAGGATGCAAATACTCCAGGAATCTGTGAGGGCTACTTGATGAAAAGGAGAAAGTGGCCTCTTAAAGGCTGGCATAAG
Seq A exon
GTATTGGAAAAACTGGTGTTCAATGTCATTTTCTGCTGGCACTTGTCGCATTGTGATTCTAACGTTATGCTTTCTTACAG
Seq C2 exon
AGATACTTTGTATTGGATAAAGGGATTCTACGATATACAAAAAATCAACATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012981:ENSDART00000020667:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.7=31.2)
A:
NA
C2:
PF154091=PH_8=PU(16.2=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTGGGAGGTAATGGACGA
R:
TCGTAGAATCCCTTTATCCAATACA
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]