HsaINT0118714 @ hg19
Intron Retention
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:16387]
Coordinates
chr17:45897095-45897462:-
Coord C1 exon
chr17:45897337-45897462
Coord A exon
chr17:45897149-45897336
Coord C2 exon
chr17:45897095-45897148
Length
188 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
ACTCCTGGGCAACATCACAGAGA
3' ss Score
-0.04
Exon sequences
Seq C1 exon
GCCTCTGAGCTGTGGGAGGTGGTGGAGGAGCCTCGGGTCAGGCTGGGGACAGAGGGTGTCATGCCTGAGAGGCAGGAAGGTCACCTGCTCAAGAAGAGGAAGTGGCCTCTGAAGGGCTGGCACAAG
Seq A exon
GTAGGGTGGGCAGGCAAAGGGAGGGTCCAGACATGGGGGGCGGGGTGGGAATGGGGGGCAGCTGCTGGGCAGTCCAATGGTGTTTGCATGATGAGAAGGAAAAGAAAAGCTAATTTGTGTGGTTGCCTTCTCCCTCATGCCCTTCCTCTCGGCCTCCCGGGTCCTGTCACTCCTGGGCAACATCACAG
Seq C2 exon
AGATACTTTGTGCTCGAGGACGGGATCCTTCATTATGCAACAACCCGGCAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-OSBPL7:NM_145798:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.7=35.7)
A:
NA
C2:
PF154091=PH_8=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGAGCTGTGGGAGGTG
R:
TCTTGCCGGGTTGTTGCATAA
Band lengths:
178-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)