HsaEX0044934 @ hg19
Exon Skipping
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:16387]
Coordinates
chr17:45896352-45897462:-
Coord C1 exon
chr17:45897337-45897462
Coord A exon
chr17:45897095-45897148
Coord C2 exon
chr17:45896352-45896465
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACTCCTGGGCAACATCACAGAGA
3' ss Score
-0.04
5' ss Seq
GACGTGAGC
5' ss Score
5.28
Exon sequences
Seq C1 exon
GCCTCTGAGCTGTGGGAGGTGGTGGAGGAGCCTCGGGTCAGGCTGGGGACAGAGGGTGTCATGCCTGAGAGGCAGGAAGGTCACCTGCTCAAGAAGAGGAAGTGGCCTCTGAAGGGCTGGCACAAG
Seq A exon
AGATACTTTGTGCTCGAGGACGGGATCCTTCATTATGCAACAACCCGGCAAGAC
Seq C2 exon
ATCACCAAGGGGAAGCTCCATGGCTCCATCGATGTCCGGCTGTCGGTCATGTCCATCAACAAAAAGGCCCAGCGCATTGACCTTGACACTGAAGACAACATCTACCACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.262 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.7=35.7)
A:
PF154091=PH_8=FE(18.9=100)
C2:
PF154091=PH_8=FE(41.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGAAGAGGAAGTGGCC
R:
TCAGTGTCAAGGTCAATGCGC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)