DreEX6069725 @ danRer10
Exon Skipping
Gene
ENSDARG00000012981 | osbpl7
Description
oxysterol binding protein-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-212]
Coordinates
chr12:28676847-28677311:-
Coord C1 exon
chr12:28677168-28677311
Coord A exon
chr12:28677034-28677087
Coord C2 exon
chr12:28676847-28676960
Length
54 bp
Sequences
Splice sites
3' ss Seq
AACGTTATGCTTTCTTACAGAGA
3' ss Score
8.25
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
AACGTTAAAGACTGGGAGGTAATGGACGATTGTCCAGCAGACTTGACCATAACTGCTGAAAACATTCAGGATGCAAATACTCCAGGAATCTGTGAGGGCTACTTGATGAAAAGGAGAAAGTGGCCTCTTAAAGGCTGGCATAAG
Seq A exon
AGATACTTTGTATTGGATAAAGGGATTCTACGATATACAAAAAATCAACATGAT
Seq C2 exon
TTTTCTAGAGGGAAAATGCATGGTTCACTGGATGTCAGCCTTGCAGTTATGTCCGTAAACAAAAAAGCGAGACGCATAGATCTGGATGCTGGAGACAATCTGTATCATTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012981-'7-4,'7-2,8-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.7=31.2)
A:
PF154091=PH_8=FE(18.9=100)
C2:
PF154091=PH_8=FE(41.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACTTGACCATAACTGCTGA
R:
GGCTGACATCCAGTGAACCAT
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]