MmuEX0033243 @ mm10
Exon Skipping
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:97052486-97054228:+
Coord C1 exon
chr11:97052486-97052611
Coord A exon
chr11:97052770-97052823
Coord C2 exon
chr11:97054115-97054228
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCCTCTGGGGTACAGAGG
3' ss Score
3.72
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCCTCGGAGCTGTGGGAGGTGATGGAGGAGCCTCGGGGCAGGCTGGGAGCAGACGACATCATGCCTGAGAGACAGGAAGGACACCTGCTCAAGAAGAGGAAGTGGCCTCTTAAGGGCTGGCACAAG
Seq A exon
AGGTACTTTGTGCTGGAGGACGGGATCCTACACTATGCCACGACTCGACAAGAT
Seq C2 exon
ATCACCAAGGGGAAGGTCCACGGCTCCATCGATGTCCGGCTATCCGTCATGTCCATCAACAAAAAGGCCCAGCGCATTGACCTCGACACAGAAGACAACATTTACCACCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.456 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.7=35.7)
A:
PF154091=PH_8=FE(18.9=100)
C2:
PF154091=PH_8=FE(41.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGAAGAGGAAGTGGCC
R:
TTCTGTGTCGAGGTCAATGCG
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types