BtaEX6088122 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013523 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr19:39254950-39256025:+
Coord C1 exon
chr19:39254950-39255075
Coord A exon
chr19:39255251-39255304
Coord C2 exon
chr19:39255912-39256025
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGGACATCCTCACAGAGA
3' ss Score
5.8
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCCAGCGAGCTGTGGGAGGTGGTGGAGGAGCCTCGGGGCCGGCTGGGGGCAGAGGGTATCATGCCCGAGAGGCAGGAAGGCCACCTGCTCAAGAAGAGGAAGTGGCCTCTGAAGGGCTGGCACAAG
Seq A exon
AGATACTTCGTGCTCGAGGATGGGATTCTTCACTACGCGACAACTCGGCAAGAT
Seq C2 exon
ATCACCAAGGGGAAGCTCCATGGCTCCATTGATGTCCGACTGTCGGTCATGTCCATCAACAAAAAGGCCCAGCGCATTGACCTTGACACTGAAGACAACATCTACCACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013523-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.7=35.7)
A:
PF154091=PH_8=FE(18.9=100)
C2:
PF154091=PH_8=FE(41.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGAAGAGGAAGTGGCC
R:
TCAGTGTCAAGGTCAATGCGC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]