RnoEX0062543 @ rn6
Exon Skipping
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:84988010-84989384:+
Coord C1 exon
chr10:84988010-84988135
Coord A exon
chr10:84988291-84988344
Coord C2 exon
chr10:84989271-84989384
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTCCTGCCCCTCTGGGACAGAGG
3' ss Score
5.14
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCCTCCGAGCTGTGGGAGGTGGTGGAGGAGCCTCGGGGCAGGCTGGGAGCAGAAGACATCATGCCTGAGAGACAGGAAGGACACCTGCTCAAGAAGAGGAAGTGGCCTCTTAAGGGCTGGCACAAG
Seq A exon
AGGTACTTTGTGCTCGAGGATGGGGTCCTTCACTACGCCACGACTCGACAAGAT
Seq C2 exon
ATCACCAAGGGGAAGGTTCATGGCTCCATCGATGTCCGGCTATCCGTCATGTCCATCAACAAAAAGGCCCAGCGCATTGACCTCGACACAGAAGACAACATTTACCACCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(20.8=35.7)
A:
PF154091=PH_8=FE(18.9=100)
C2:
PF154091=PH_8=FE(51.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGAAGAGGAAGTGGCC
R:
TTCTGTGTCGAGGTCAATGCG
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]