GgaEX7011018 @ galGal4
Exon Skipping
Gene
ENSGALG00000028934 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr27:3903203-3903720:+
Coord C1 exon
chr27:3903203-3903325
Coord A exon
chr27:3903435-3903488
Coord C2 exon
chr27:3903607-3903720
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACCTCTCTCTCTGTCCCCAGAGG
3' ss Score
13.23
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GGCTCGGAGAGCTGGGAGGTGGTGGAGGAGCCACGAGCCCGGGGCAGCCCAGGCCGGGAGCCAGAGCGGCAGGAGGGCTACCTGCTCAAGAAGAGAAAGTGGCCCCTGAAAGGCTGGCACAAG
Seq A exon
AGGTACTTTGTGCTGGAAAATGGCATCCTGAAATACGCCACCACGCGCCAGGAT
Seq C2 exon
GTCCTCAAGGGCAAGCTGCACGGTGCCATCGATGTCCGTCAGTCTGTCATGTCCGTCAACAAGAAGGCGCAGCGGGTGGACCTGGACACGGAGGAGAACATCTACCACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028934-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.683 A=0.000 C2=0.237
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.7=36.6)
A:
PF154091=PH_8=FE(18.9=100)
C2:
PF154091=PH_8=FE(41.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAGTGGCCCCTGAAAGG
R:
AGATGTTCTCCTCCGTGTCCA
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]