HsaINT0118715 @ hg19
Intron Retention
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:16387]
Coordinates
chr17:45896352-45897148:-
Coord C1 exon
chr17:45897095-45897148
Coord A exon
chr17:45896466-45897094
Coord C2 exon
chr17:45896352-45896465
Length
629 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGC
5' ss Score
5.28
3' ss Seq
TACCAACACTTCACCCCCAGATC
3' ss Score
7.44
Exon sequences
Seq C1 exon
AGATACTTTGTGCTCGAGGACGGGATCCTTCATTATGCAACAACCCGGCAAGAC
Seq A exon
GTGAGCCCGGGCAGTGGCTTGGGGTTGTGGGAGGAGTCTGGCCCCAGTATGCCCTGGGCAGGCATGGGGTATCTGGAATCGACCAGAGCAGGGTCTGAATCCCAGGTCCACCACTTGCTGAATGTGTGATCTCGGGCAAGTTACATCCCTGGGCCATAGCTTCCTCACCTCTAATGGGAGAGCACCATCCCCCAGGTGCAGAGCTGTCATGGTAAGGGAGGTCATACGTACAAGGCTCTCTGGACAGGGCAGAATAAGTGCCCAAGAAATGGGGGCTTTACCACCCTCATCCTGGTCCCATTCTCAGGCTGGGAACAAGGAACTGAAGGCCTGGGTACCCAGGATCTCTCTGGGAGGGTGTTGCCTTCCACAACCCTGCAGACCCCTGAGGGTGGGAATAGTTTTTCTTGATCTGTGACTTCTTAGAGACCAAGATGTGACTTGACGTAGGGGAGCGTTCTGCACATGGGAGGATGATTGACAAGTCTCTACTGATAGTGTGACTTGGACATGAGGGTGAACCTGCCACCTGGCCCTTGAGCCTAGAATGGCATCAGGGAGATGGTGGCTCTATGGCTCTGAGAGCCTAAAACAGGTCCCCTCTCCCTCTACCAACACTTCACCCCCAG
Seq C2 exon
ATCACCAAGGGGAAGCTCCATGGCTCCATCGATGTCCGGCTGTCGGTCATGTCCATCAACAAAAAGGCCCAGCGCATTGACCTTGACACTGAAGACAACATCTACCACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-OSBPL7:NM_145798:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(18.9=100)
A:
NA
C2:
PF154091=PH_8=FE(41.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)