GgaINT1020427 @ galGal4
Intron Retention
Gene
ENSGALG00000028934 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr27:3903435-3903720:+
Coord C1 exon
chr27:3903435-3903488
Coord A exon
chr27:3903489-3903606
Coord C2 exon
chr27:3903607-3903720
Length
118 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
GGGGTCCCTGGGCTCCCCAGGTC
3' ss Score
6.35
Exon sequences
Seq C1 exon
AGGTACTTTGTGCTGGAAAATGGCATCCTGAAATACGCCACCACGCGCCAGGAT
Seq A exon
GTGAGTACGGGGCTGGGCTGCTCCTGTGCAGCCTCCCCATGGGATCTGGCTGGGGGAGACCCCGTTTCACCGTGAGGAAGGGGGTCTTCCTCTTGACGGGGGTCCCTGGGCTCCCCAG
Seq C2 exon
GTCCTCAAGGGCAAGCTGCACGGTGCCATCGATGTCCGTCAGTCTGTCATGTCCGTCAACAAGAAGGCGCAGCGGGTGGACCTGGACACGGAGGAGAACATCTACCACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028934:ENSGALT00000043335:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.237
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(18.9=100)
A:
NA
C2:
PF154091=PH_8=FE(41.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACTTTGTGCTGGAAAATGGC
R:
AGGTGGTAGATGTTCTCCTCCG
Band lengths:
163-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]