MmuINT0113746 @ mm9
Intron Retention
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:96913841-96914137:+
Coord C1 exon
chr11:96913841-96913925
Coord A exon
chr11:96913926-96914083
Coord C2 exon
chr11:96914084-96914137
Length
158 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TCTGTCCCTCTGGGGTACAGAGG
3' ss Score
3.72
Exon sequences
Seq C1 exon
GCTGGGAGCAGACGACATCATGCCTGAGAGACAGGAAGGACACCTGCTCAAGAAGAGGAAGTGGCCTCTTAAGGGCTGGCACAAG
Seq A exon
GTAGGGCGGCAGGGCAAGGGAGGAGCTACCTGAGGAAGGCTGCTGGACAGCCCTGGTATTCCTGTGTGGAAAGGAGAAGAAAAATGTGTGTGTTTGTTCTCTCCCCACCCCCCACCCTCCATGTTCCTGGCTGCTTGTTCTGTCCCTCTGGGGTACAG
Seq C2 exon
AGGTACTTTGTGCTGGAGGACGGGATCCTACACTATGCCACGACTCGACAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534-Osbpl7:NM_001081434:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.7=68.2)
A:
NA
C2:
PF154091=PH_8=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAGCAGACGACATCATG
R:
ATCTTGTCGAGTCGTGGCATA
Band lengths:
138-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: