MmuINT0113746 @ mm10
Intron Retention
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:97052486-97052823:+
Coord C1 exon
chr11:97052486-97052611
Coord A exon
chr11:97052612-97052769
Coord C2 exon
chr11:97052770-97052823
Length
158 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TCTGTCCCTCTGGGGTACAGAGG
3' ss Score
3.72
Exon sequences
Seq C1 exon
GCCTCGGAGCTGTGGGAGGTGATGGAGGAGCCTCGGGGCAGGCTGGGAGCAGACGACATCATGCCTGAGAGACAGGAAGGACACCTGCTCAAGAAGAGGAAGTGGCCTCTTAAGGGCTGGCACAAG
Seq A exon
GTAGGGCGGCAGGGCAAGGGAGGAGCTACCTGAGGAAGGCTGCTGGACAGCCCTGGTATTCCTGTGTGGAAAGGAGAAGAAAAATGTGTGTGTTTGTTCTCTCCCCACCCCCCACCCTCCATGTTCCTGGCTGCTTGTTCTGTCCCTCTGGGGTACAG
Seq C2 exon
AGGTACTTTGTGCTGGAGGACGGGATCCTACACTATGCCACGACTCGACAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534:ENSMUST00000090020:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.456 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PU(16.7=35.7)
A:
NA
C2:
PF154091=PH_8=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGGAGCTGTGGGAGG
R:
TCTTGTCGAGTCGTGGCATAG
Band lengths:
178-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types