DreINT0110363 @ danRer10
Intron Retention
Gene
ENSDARG00000069934 | parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:ZFIN;Acc:ZDB-GENE-070912-387]
Coordinates
chr9:20682607-20682967:+
Coord C1 exon
chr9:20682607-20682693
Coord A exon
chr9:20682694-20682802
Coord C2 exon
chr9:20682803-20682967
Length
109 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGC
5' ss Score
3.28
3' ss Seq
TCATGTGTTTATGTGATCAGGAT
3' ss Score
6.94
Exon sequences
Seq C1 exon
GTAAAGGAAAAAGAGCAGGCTCGTAAGGAGTACAAGCAGGCTATAGAGAAAGGTCATGGAGCCTACCTGATGGACCAGGATGCACCT
Seq A exon
GTGAGCTCCTGAACATCATTTCCTACAGATGAGCTAGTCATAATAATAACTGCTGTGTGGCTGATATGAACAGGAATGTTTGTCTAAGGTCATGTGTTTATGTGATCAG
Seq C2 exon
GATGTGTTTACTATCAGCGTGGGGAATCTTCCTCCTGGAGCCTCAGTTTTGATCAAGGTGACGTTCATCACTGAGCTGGTGGTGAGATCGGGCTCTATAGTCTTCTCACTGTCTGGCAGCGTGGCACCATGGCAAGAGAGCGCCGCCCTTAACCAGACAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069934:ENSDART00000145111:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084875=VIT=FE(24.6=100)
A:
NA
C2:
PF084875=VIT=PD(21.2=44.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAAAAAGAGCAGGCTCGT
R:
GAGTTGTCTGGTTAAGGGCGG
Band lengths:
247-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]