MmuINT0115452 @ mm10
Intron Retention
Gene
ENSMUSG00000054509 | Parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:MGI Symbol;Acc:MGI:2685589]
Coordinates
chr14:56610754-56613818:+
Coord C1 exon
chr14:56610754-56610840
Coord A exon
chr14:56610841-56613653
Coord C2 exon
chr14:56613654-56613818
Length
2813 bp
Sequences
Splice sites
5' ss Seq
CCGGTACAG
5' ss Score
5.65
3' ss Seq
AGCAGCTGTTTGTATTTCAGGAT
3' ss Score
8.2
Exon sequences
Seq C1 exon
ATAAAGGAAAAGGAAGAGGCCCGGCAGGAGTACCGAGAGGCTGTCAGCCAAGGCCATGGTGCTTACTTGATGGACCAGGACACTCCG
Seq A exon
GTACAGCTTGTCACTCATTCTGTAGCCCATGCATTATGGGAAATGATTTGCAATATGAATCCATAATAGAAGCCAAGATTATTTACAGTACTCTGAGCTTATGAGATTTCTCTTAAATGTCACACGTGGTGGCATATACCATAATCTCAGCCCTTGAGAGGTAGAGGCAGGAGAATTGCTGCAAGTTCAAGGCTCACCTGTTGTTCTACACTGTGAGCTCTAGCCTGTCAGAGCTTCCTAGCAAGACTTTGTCTCAAACACACAAATGAAAACCCCTTAGGAGTACAGGAGGTCAAGCCAGTCATACCCACGTGCGTTGTCTAAAGGAGGAAATGAAGTCGCTGTTGTGTGAAGCAGAAGAACTGGTACTGCCACCAGGCACTCGACTGCCAGACTGATAAGAGAACACACACATTGGGAGTAGACAGTATCCCTCTGTAAAATGTCTTTTTCCCATGCTCCAGTCATGGCCCGGTCCTCAGGTCAGTCAACAGGGTCTGCAAGAGAGAGTGGGGACTGAGGGGCAAGAGACACGAAGAGTGGAAACAAATAAGTCTCGTTTATTGAAAGGCAACTAAAGGTATATGTGCACTCGCTGAGGAGTGCAGCTGGAGACACTTAACCACAGGTCCAGGATTGATAGGAGAAAACCAAGATGTTATCAGTGTGTTCAGCTGAGGTGGGCTTCTTGCAAATACATCATGCTAGGAAAACAAGTCTCTCATCAGGGTGAAAAAGTACCACCTGTGAGTAAATAGCCCGAGATGGCTGCAGAGCTGATAACTGCTTTCTGCCAGGAGTTGGCTCCCAACATTCCCAGAACTAATCTCACCTATCAGTATGTCCACCTTTCACCAAGCCGTAACACAGAAGGCATCCCTGTAAGGTCTTTCAGAAACCTGGAGTTTGGTTGAAGGAAGAACATGTTAATGCGGATCTAAGGGATCACTTGCTTTAATTGTTTACACTTAGTGTATGCACACACACACCATATTATGCATGTAGAAGTCAAAGCACAACTTCCTAGAGTTGATTCTCTCCTTCTAGCTGTGGGTCCAGGAAACCGAACTCAGGTCGTCAGCCTGATAGCTTGTGTCTTTACCTGCTGAGCCATCTTATCGACCCATTCCAGGGCTCCTATCCACACACTTAAAGGATTGGCACTATGAATTTTAATAATTGTCCCTTCATTGTTTTTGTTCTTTTCTACAGATAGATATACTTAATATCAGAAGCAAATAATTTAAGGCTGGTGAGATGGCTTAGCAGGTAAAGGCTTGATATCCTGAGTTGTATCCCCAAAACCCATGTAAAGGTAGCATGAGAAAATGGATTTCACAAAGTTGTCCTCTGACCGCCACATGCATACATGGAAGGCAATGCTCATAGTCACATACATATCCATGCACACACATGCTCACATTCACACACACTGCATGCCCACACCCACACACCTCATACCCGTACATTATGCACACATATATACACCTCCTACACACTCATGCTTCACGCATACACACACTCAATAGGTTTAAAAAGCAACAGAATAGTAATAACACTTTAGCCTAAGTTAATCATTGATTGTCTACTCTTCTAATCCACATTGTTAAATTTTCATCATAGAGGTAGAATGACCAGTGTAGTTGGAGATGTTGAGATGAGCTCTGTACATAGCAGGAAAGAGGTAGATCTAGATATTCTAGATATATCTAGAACTGGGCTCATAATGTTACAGAATTAACACGCCTTCCCCCCAGTGAGAAATCAGTCCAGCATTAGACATAAGTAAGGAAGAACTCTTGAGTAATGTGCACAACTGGCTCTGGCTAATGCACAAAAGGGAGCCAGCCCGGAACAGAAGCCCGTATCAGCTCATGTACTTTCACAGAGTCGGAAATCCCAAGGTTTGCTTGTTAGGACAAATGGGGATACTTGTAATGGAAAATACTGTCTTTAGGCTGCTTCCCCCAGGCAGCCACTAACCAGGGTTGTCCTGTTGGCCTGGCAGAATTACGCTCTACCTGACATTTCCTGAACAGTCTTAGTAGATGGTTGATAAGTCCATTTGTTAGTCTCAGTCCTTCCTGTGTCAGTAGCACAGGCAGCAGAGGGCTGGCCTGAAGCTCTGGGCTGTGACAGCAGCACACCTGTGATCTCAGCACTCATGAAACAGAAGCAGAAGGACCAGAAGTTCAAGGTCATCTTTGCCTATACAGTGAGAGTGAGGCAAGTCTAGGATATATGAGACTCTGAAAGGAGGGAAGGGAAGAAAGGAGGAGAAGAGGGGGAAGGGAGAGGAATGAAAGATGTGTTTTTGTCTTAGCTGCTCATTAGATTGCCAGCTTCTACAACAATCATCAATATTCCATTCAAAGAATGTTAAGTTCTTTTAAAGTACAATTTTAAACTTAAATTTAAATGGTTTTAATGAGTAGATTAAGCATAGTACAAGTTTAGAGAATGCTGCTTTCTGCAGCCACTGGGGAGCTAGTGCCAACTGTCATTAAGACCAGTGAAGTCACAGGTCCTTCCAGGAAGGGGTTGCATGGGGACACTCATGTGTTAGTGTTTGCACCTGCAGGGTGGAGTCCCTCGAGCAACTTTCTCAGCGGCCAGCCTCTCCTCTTGCCTCTCACAGATGTCACCCTGTCCCCATTACTAATGGATTGTTCCCGAGTTCCCCATCACACTAGTAATGGTATATCACCATTTTCTTGAGAAGAACTTGACTGATTGTCATTGATCACTTTAGTAATACAAGGGATTAACTAGCAAAGAGTGGACATGCTTCTGAGCAGCTGTTTGTATTTCAG
Seq C2 exon
GATGTTTTCACTGTAAGTGTTGGAAACTTACCCCCTCGGGCTAAAGTCCTCATCAAAATCACCTACATCACGGAACTCAGCATCCAGAGTCCTGTGGCCATCTTCTTCATCCCTGGCACTGTAGCACCCTGGCAACAGGACAAGGCGTTGAATGAGAACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054509:ENSMUST00000161553:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084875=VIT=FE(23.7=100)
A:
NA
C2:
PF084875=VIT=PD(20.3=43.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types