RnoINT0001933 @ rn6
Intron Retention
Gene
ENSRNOG00000051196 | AABR07018038.1
Description
NA
Coordinates
chr15:36859100-36861816:+
Coord C1 exon
chr15:36859100-36859186
Coord A exon
chr15:36859187-36861651
Coord C2 exon
chr15:36861652-36861816
Length
2465 bp
Sequences
Splice sites
5' ss Seq
CCGGTATGG
5' ss Score
8.44
3' ss Seq
AGCAGCTGTTTGTATTTTAGGAC
3' ss Score
8.85
Exon sequences
Seq C1 exon
ATAAAGGAAAAAGAAGAAGCCCGGCAGGAATACCGAGAGGCTGTCAGCCAGGGCCATGGTGCTTACTTGATGGACCAGGACACTCCG
Seq A exon
GTATGGCTTGTTACTCATCTTGTAGCCAGTGCATCATGGGAAATGTAGTAGGCATTCATAAGAGAAGCCACCATCTTTTACAGTACTCTGGGCTTATGAGATTCCTCATAAATGCCACACAGGGCGGTATACACCTGCTGCAATTTCAAGGCCCACCTGCTGTTCTACACTGTGAGCTCTAGGCTGTCAGAGCGACCTAGACACACTAATGCAAACCCCCTCGGAGTACAGGAGGCCAAGCCAGCCATAGCCATGTGCATCGACTAAAGGGGAAATAAAGTCAGTGTTGGACGAAGCAGGAAGAACTGGTGCCGCCGCCAGGCACTGGGCTGCCAGAGCTAACAAGAGAACACACACTGGGAATACAGTCTTCAGATGTAAAATGTAATCTATTAATATCTCTCCCAGAACTAATCGCCGATCAATATGTCCACCTTCCACCAAGCCGTGACGCAGAAGGCATCCCTGTAAGGTCTTTTAGAAATCCAGTGTTTGGTTGAAGGAAGAGCACACTGAAGGTTAATGCAGATCTAAGGGATAACTTGCTCTGTGCTTACATTTGGTTAGTTCGTGTGCGTATGCACACACACCTCAGAATGTACACAGAAGTCAGAGCACGGCTTTCTATCTGAGTTGGTTCTCTTCTTCCAGCTGCGGGTCCAGGAAACAGAACTCAGGTCGCCAGCCTGGTGGCTTGTTCTTTACCCGCTGAGCGATCTCTTCAGCCCATTCCAGGGCTTCCGGCCACATACTTAAAGGATCAGCACTGTGGCTTCTGTAATAATTGCCCCTTCGTTGTTTTAGTTCCTTTCTACAGATAGAGATACGTAATATCAGAAGCAATAATTTAAGGCTGGCGAGATGGCTTAGCAGGTCAGAGTGCTTGCTGCGTAAGCCTGACACCCAAGTCGGCTCCCCAGAACCCATGTAAAGGTAGCATGAGAAAATGGAGTTCACAAAGTTGTCCTCTGGCCTCCACGTGCATACGCAGAAGGCAATAACTTACATACAAATCCACACCATGGCACATGCATGCTTACATGCACACACAGTGCATGCCCACACTCAGACACCTCACACACATACATGATACACACATACACCTCCTGCACACTCATGCTTCTTGCACACACACACCCTCAGTAGGTTTAAAAGCAAGCAGCATATTAATAACTTAACGCTTAAGCCTAAATTAATCAGTGATCCAAATGTGCTATGTTTTCATCATAGAGGGAGAATGGCCAGTATAGTTGGAGAAGTTGAGATGAACTCTCACATTGCAGGAAATAGGTACCTCTAGATAGTTGTAGATCTGGACACATAGTGTCACAGAATTAACAAGCCCTCCCAGTGAGAAGTCACTCCAGCATTAGAGATAAGTAAGAGAGAGCTCTCACGATAGTGCACGACCTGTTCTGGCTAATGCACAAAAGGGAGCCAGCCCTGAACAGGCGCCCATGTCAGCTCATGTAGGTTCAGAGACAGAAAGTCCAAGGTTTGGTTGTTTGGACAGATGGGGAGATTTACAACGTAAAATACAGTCTTCATGCTGCTTCTCCCAGGCGGCCGCTAGCCCAGGTTGTCCGTTTGCCTGGCTGAACTATGCTCTTTCTGGTAATAAGAGAGAGGGCCGGAAGTGCTGCTTTAACTAAATTCCGCTTTGTGGGACTTCGTATTTCCTGGACAGTCTTGGGAGATGCTCAATGAATCCATTTGTTAGCCTCAATCTCTCCTGGATCAGTAGCTCAGGCAGAAAAGCGCTGCCATGGAACCCTGGGTTCCCCTTACCAGGCAAACCAGGCGGGAATCTCGGCACTCATGAAGCAGAAGTTCATCCTTGGCTGTAGAGTGAGTGTGAGGCAAGTCTAGGATATATGAGACTCTATCTGAAAGGAGGGAAGGAGAGAAAGGAGAGGAAGAGGGGGAAGGGGGAAGGAATGGAAGACGTAATTTCTCCTTTTTCTGTCTTAGCTGCTCATTAGATCGCCAGCTTCTACAACAATTATCAACATTCCATGCAAAGAATGTTAAGTACATTTAAAAGTACAATTTTTAAATTTAAATTTAAAGGGTTTTAATGAGTAGATTAAGCATCACACAAGCTTAGAGAATGCTGCTTTCTGCAGCCACTGGGGAGCCAGTGCCAACAGCCATTAAGACCAGAGAAGCCGTAGGTCCTTCCAGGAAGGGGTTACATGGAGACACCCATGTGTCATAGTGTCCGCACCTATGGTATGGAGTCCCTTGAGCAACTTTCTTAATGACCAGCCTCCCTCTGCCTCTCCTCAGATGTCACCCTGTCCCCATTAGTAGTGAATTGTCCCAGAGTTCCCCTTTACACTACTAAATGGTATCTCACCATTTTCTGGGGAAGAGCTTGGCTAATTGTCATTAATCCCTTTAGTAATACAAGGAATTAACCAGCAGCACGTGGACGTGCTTTTGAGCAGCTGTTTGTATTTTAG
Seq C2 exon
GACGTCTTCACTGTAAGTGTTGGAAACTTACCCCCTCGGGCTAAAGTTCTCATCAAAATCACCTACATCACGGAACTCAGCATCCAAAGTCCCGTGGCCATCTTCTTCATCCCTGCCACTGTAGCGCCCTGGCAACAAAACAAGGCATTGAATGAGAACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051196:ENSRNOT00000076667:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084875=VIT=FE(23.7=100)
A:
NA
C2:
PF084875=VIT=PD(20.3=43.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]