DreINT0111632 @ danRer10
Intron Retention
Gene
ENSDARG00000003449 | pde10a
Description
phosphodiesterase 10A [Source:ZFIN;Acc:ZDB-GENE-040426-1115]
Coordinates
chr13:4484916-4485224:+
Coord C1 exon
chr13:4484916-4485027
Coord A exon
chr13:4485028-4485143
Coord C2 exon
chr13:4485144-4485224
Length
116 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
CATCTGGTGTGTAATGGAAGGGA
3' ss Score
-0.67
Exon sequences
Seq C1 exon
GGACCGTGTGATTGGTCTGATGATGACCGCCTGTGATCTCTGCTCTGTTACCAAATTATGGCCCGTCACAAGACTCACAGCCAATGACATCTACGCCGAGTTCTGGGCTGAG
Seq A exon
GTAAACTTTTGTCATTGCTAACCAAGCAATGAATCTTTTGAATAAAGTATTGTTTTGTGCACTTTGTGAAAATGAAGGACAGTCAGTGAAATTGTTCATCTGGTGTGTAATGGAAG
Seq C2 exon
GGAGATGAAATGAAGAAGATTGGAATGCAGCCTATCTCCATGATGGACAGGGATAAAAAGGATGAGGTACCCCAGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003449:ENSDART00000144312:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.284
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(15.7=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCGTGTGATTGGTCTGAT
R:
CCTCATCCTTTTTATCCCTGTCCA
Band lengths:
179-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]