HsaINT0121854 @ hg38
Intron Retention
Gene
ENSG00000112541 | PDE10A
Description
phosphodiesterase 10A [Source:HGNC Symbol;Acc:HGNC:8772]
Coordinates
chr6:165339278-165343502:-
Coord C1 exon
chr6:165343391-165343502
Coord A exon
chr6:165339359-165343390
Coord C2 exon
chr6:165339278-165339358
Length
4032 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TTTCTCCCCATTCATCTTAGGGT
3' ss Score
9.78
Exon sequences
Seq C1 exon
AGACCGTGTAATTGGTTTGATGATGACTGCCTGTGACCTTTGTTCTGTGACAAAACTGTGGCCCGTTACAAAATTGACGGCAAATGATATATATGCAGAATTCTGGGCTGAG
Seq A exon
GTATGTCCTTGATTCTTATATTGACATAGATAGTGAGGAGAAATAAAACGTATGGATCAATTGCTAAGAATACTTTAGTTGTTCATGTTGATAGTTATTTCAGAGAACTGTGGTGAGTCACATACTGAAGGATTTAGCACTTATGCAGATACAAAGAGAGAATGATCATTCTTTTACATATTACTTACATGTGTGTCTAATTCTCTGAGCTCAACTGAAAGAGTTTAGGAACTTACTCACTGAACAGTAGTATAACAGTTATCTTACTTAACAGCTGATCTTTTGTTCATTCATTCAATAAACATTACTGGCCATCTACTTTAGATAGGCACTGGACAAAGTACTCAGAGGGTCCCATAATACAGGATATATCCACCTGCAGTTAAAAATTCAGGAGAATAATTGTTTTGCACCATAGACATTGAGAATATGTAAATATAACCAATAGCTCACCTGCAAATTATGTGTTCTGCAGAATGTGTGGAATATTCATTCATAATACTCCTGAAACAACACGTAAATGACTTTTATTAACGCCTTTTCTTGACTGACTTATCTAATTTATCAGTGATGTGCATTGTACTGCTCAATTTGCTGATGGAATTGTATGTAAGTAAGTAGAATATCATTCTCCCATCCAAATGAGTCACGGATACCTAGGCCTTTGCATATTCAAAAACTACTCTATGAAGAAAGCTGTAAATCTTTTGAGTACCTCTTCTGGTTTGAATAAATAAAAGTAAATTTGGAGGACAAAGCAGCTGATAATTCAATCGTATATCTCATTCATACAGAAGAATGTATGTAAAACATAAACAGCAAATCATTCAGCCACAAGTTTAGTGGGAAAGGTTTATCATGTTGAATTATTTCATAATAATAAAGCCAAAGTATGTTTACTGTATGAGGATCACAGACCTTGAGTTGATTATACTCCCGGCATGATTTCTCCAGAATGCTTTACACATCGCATATGCGTGGTCTCGCATGAGCTTTTTCTTTATTTTATTGTGTATGTGTCAGAACCTAGTTACCATCAGACTCAAGTAGGAAGATTGATTTCAATGCACAGTTGACCCTTGAACAACACGGGTTTGAACTGTGTGGATCCACTTATATGTAGATATTTTTCAATAAATATATTGAAAGATTTTTTTGGAGATCTATGACAAAAATACAGAACAACATATCCTAGAAATATAAAAAATTTAAGTATGCCATAAGTGCATAAAATATATGTAGATACTAGTCGATTTTATCATTTACTACCATAAAATATACAAAAATCTATGATAAGTTAAAATTTATCAAAACTTATATACACACTTATAGACTGGAGAGAAATGTAAACAAACAGATGCCGTGTTAAATTGTAACTGCGTAAAGTTAACCATAGTACATACGGCAGTACTGTAATAATTTTGCAGCAACCTTCTTTTGCTGTTACGGTGAGCTCAAGTGTTACAAGTATCCACTTAAAATGCTGTGTTTAAAATGCTCTGTGATGCTAATTGTCTCTGAGCTATTCGTCTCTCCAGTAAATTGTGTATCACAGTAAAAAGTGATCTCTCGTGGTTCTTGCATAGTTTTCATTGTGTTTAGTGCAATACCTAAGTCCTCCGTAACACCATAGCACCTATACAGAGTTACACTAGGATGCTGGAAGTGCTCCCAAGAAGCAGAGAAAAGTCATGACATGACAAGAAAAAGTTGAGTTGCTTGATACGTTCCCTAGACTGAAGTCTGCAGCTGTGGTTGCCGCCATGTTAACATAAATGAATCCCGTGTAAGGATCGTTGCAAAAAAAGAAAAGGAAATTCATGAAGCCATCACTGCAGCTATGACAACAGGAGCAAAAACCTTGCACTGTTTGTGAAATATCTTTTTATCTCATACTAAAAATGCACGTTTTGTTCAGGTACAGGATTGCTATGAGAAAGGCATAACTATAGACTGTAATATGATTTCTATATTCTAGACAAATGTAGAAAATGTGCAGTCATTAAATGACAACTTAAAGTAAAAGGAAGGTGCAGGATTAAAAGCTGGAGAATTTAATGCCAAAATGTGACCAATATGTAATGGAGATGTTTTTCCTTTATATTATTCACTGGTTATTCAGTCCACAGATAATGATTCAGCTCTCTGCATGCTCTTAGGTGCAGCCTTCACCAACCTCAATAGTCCACAGGAAGAAGCAGGAATATATTCACCAAGTCCTGACAGTTGTTCCCAGTATCTATAAAGTCCTGTCTCTTCTCTCCATCCTCACAATCTTTCCCCTCTTCAGGTCATCACCAACTCATGCCTTGAGTACTGCAACTTTCTAACTGAATTCCTTGCCATTACCTTTTAGAATTTGTGCAAAAGTAATTAATAATGTGGTCTTTGGTGCCAGGTTGCTTGAAATTAAAATTCCGCTTTGGCACTTGGTATTTAACCTCAGGCCAGTTTATGAGATAGGGATGATAATAATTCGGATTCCATCCGTACCCTGCTTCTGATCCTCTTGTTGTAATACAGACCAAAATCATGACCTCCGTGTGGAGAGCCCCACATGGCTGGCCCCCTGCCCACTGTCTGTGCAGGCATATTCCCCATCTCAGCCCCTAGCTGCCATTTAGGTCTTTGTTCCCTGCAGTCTCTGCCTGGAGCATGCTCCTGCCCTCTGTATTCTGTGAAAGCCTCAGATTGGCTCAGCCCTCTGTTAGAGCCATGGTCTGTAGCACTGGGTTCTTTTCCTTTTTAGCATTTTTGTTTCGAGTACATATTCAAATCATCGTTTGTTTAAAAAGCTGTTTCCTTGTTGGACTTGTCAAGTCTTTGAGAGCAAGGGACTTAGTATGTCTCACTCACTTTGGATAGAGAAGCAAAAGGTTTGAGACCACTGATTTTAAATTTAAAGTGGTAACAATGGAACAGCAGCCATGCTTGAAGTGGCTTTGCTTTGTCAGGACAAGTGCTTTGGTCCTGTACATAAAAATACCTAATTATGGTGATAGTAGTTTGTTTGTAGACCCTATTTTAGCAAGTCTGGGAAGTTTCTAGGCTGTACTTCTGATTTCTAAAAACATGACCAACGTTACTAAAATAATAAAAACTATGAGGGAAGAGTGGGAAGTTAGGAAAAATACTAGGAAATCTTAAGAAGATTGTACAAGTTTTACCTTTAACAAATAAATAAAAAGCAAGATAATTTCTAAAATCTTTAAAATGGGAACAGCATATCCTAGAATATTTCATAAGGATTAAATGAAATAATATTTACAAATTACTTAGCTCAGGGCCTGCATCATAGTGAATCTTTAGTAACTATTACCTGTAACTGTAAGTGAATCTTTAGTAACTAACATAGTGAATCTTTAGTAACTATTACCTGTAAGTGAATCTTTAGTAACTAACATAGTGAATCTTTAGTAACTATTACCTGTAAGTGAATCTTTAGTAACTAACATAGTGAATCTTTAGTAACTATTACCTGTAACTGTACGTGAACCTTCAGTAACTAACATAGTTAATCTTTAGTAAGTATTACCTATAATTGTAAATTAGATGATATGTGTAGTTTGTTGTACTGCGTCTTTACTAGCACATTTTAGTCGACTGGTGATGTTTATCTTCCTCTGTAAATATTCCTCTGGAAAGCCAAACTTCACTGAGTTCCATGCACTTGGAAGATCATTTGGAAGAGAGAAGGGCCTGGAGGTTATTCCATATCTTGTTATTGTTATTTCTCCTCACTGTTTACTGTATCTCCTCTTATTATAACATTTATTTACTAACTTCTGCAAAATGAAACCAGTAATAATGGCTGGGTTTCTGGTAATTCAGTAGTGGAGAAAATCAGGATAAAGTACAAAATAATGATACATTAAGTTTTTCTTTATTTTGATGTACTTTTCTTGGGTTAACAACCACAAACATTATTTGTTTTGAAGAAAATTAAGGAATAAAGGGAATAATTCAATAATATCAAAATAGTATAGCAATTTGAAATTTGAGAAAGCATGATTTTCTCCCCATTCATCTTAG
Seq C2 exon
GGTGATGAAATGAAGAAATTGGGAATACAGCCTATTCCTATGATGGACAGAGACAAGAAGGATGAAGTCCCCCAAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112541:ENST00000366882:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(15.7=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development