GgaINT0083135 @ galGal3
Intron Retention
Gene
ENSGALG00000011537 | PDE10A
Description
NA
Coordinates
chr3:45184874-45187914:+
Coord C1 exon
chr3:45184874-45184985
Coord A exon
chr3:45184986-45187833
Coord C2 exon
chr3:45187834-45187914
Length
2848 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGT
5' ss Score
10.2
3' ss Seq
TCCTCATCTCTTTTCTTCAGGGT
3' ss Score
10.76
Exon sequences
Seq C1 exon
AGACAGAGTGATTGGTCTGATGATGACTGCTTGTGATTTGTGTTCTGTAACAAAACTGTGGCCAGTTACCAGACTGACAGCCAATGATATATATGCTGAGTTCTGGGCTGAG
Seq A exon
GTACGTGTGTTTCTTTTGTTTTATTTCCTCTATTTACAAATGAAAATATTTGGGAGGAAAATTAAAAACAAAAAATTTGCCACAGATATCTTAACATATTAAATACTGTTCTTTGAGGTGTGCTTTTTTTTTTCTTTTTTTTTTTTTTAATTTACTTAGACACTATATAAAGATCTAAGTTAGCTTTCTAATTTTCAGGCAGTAATTTTTCTTTCTGTTTAAGATGAATTTGAGAAGTATATTCTAACATACAGTGACCAAGCAACAAGAATATACAAGAAAATCTCTACCTTGTTTTGAATTGCTAAGGTGAAGGACCTATTTCTAGAGAGAAATCCAAAATATGAAAACAGCTTCCAGGCCAGCTGCCTTAAAACACACTATTATAAACCTACAGTATGAATTGAAGAAATGCTAAAGCAAATGTGACAAACCCTAAAATTTTTCTGATCTCAATGTTTGAAAATTTGTGAACCAGATCAAAAACTGGGTCTCAGAGAAGGCAAGCTGATTTTTAGTATATTTAAAGTTACTCCACTAGCAGAAACATGACACTGAGCTATGCTAAAGTAATCGTGTCCATTAATAAAGATGCAGTCTCTAACATTTCTTTTCTCCAGGATTAAATATTCTAATTGTTTCATTTTAAAGTGCAAAACTAACAACTTTGGGGATATCAGGAAAAAATTCTGAAGATGTTACATAGAATTGAATTATGTAGTTTTAGAATATGTACTCTTATTTTCAAAACCGTTATTGCACATCTATCATGAAGTTTTGTTCTTTTCTGTTATGTGCCATTTGGAAGCCAGCAGAATTCAGTGGGCTTCTTTCCATTTTATATAGATGTAAAATGGAAATCAGGCCCACAGAGTTGTTGTATGCATGTAACGTTTTTGTCTTGCCTTGCGCATGCTAGTTACGGAATTAAAGATATGCATGGCATGTGTTTGTAGTTTTTCTGTATTTAAAAATTCTAGTTCTTTTAGCTATGATCAACTCAGACTACAAAAATATCTGCAAAATGTGAACTTTATAAGCTCCAAAAATCAAATTTTGTATTCAGTTTCTGAAATGTCAACATTGGCAAGTGAGTGTTCTTGTAAGTGATATAATAGAGGTGTACTGTTGATGTGCCTCACTAATTACAAACTCCACTTGTTTGGTTGATAAGACTTAAAAAATAAATTGAATGTAACTCTTATGAACACAGTGGAGAATGAAGGATCAAACTAATTCTTCCTACTAAACAATAGTAAAGATGGAATTATAGACATAGCTGAGCCTGCCCAGATGTTAAGCTATTTTCTTAGCCTAAGATGAGTTAATAAAAGTGCATTTTATATTATAAATTTATTGACCAAATTTAGATTAGAAATTTTTGAATTGCTTTTTTCCTGGGGTCATAGATTCACAGAGTGTCTGGATGTCATGTGGGATCGTATCATAGAATCACAGAATAGTTTTGGTTGGAAAGGACCGTTAAGATGATCTAGTTCTATCCCCCCTGCTGTAGGCAGGGATACCTCCGTCTAGACCAGGTTGCTCAAAGCCCCATCTGGCCTGGCCTTGAATGAATGGAAGGAGACATCCTCAGCCTCTCTGGGAAACGTGTTCCAGTGTCTCACCACCCTCACAGTAATGAATTTCTTCCTAATAGATTGTGTCTGCTGTGATTTTTTTTTTTTTTTTTGTGAGATATGAGACACTAGCCAGTTATCAATCTTTCTTCAGTGTTTTCTAAATAATATAAGTCATTCTGTTTCTGTATCTGTTCTGCAAGTATGTTACAAAAAACATTTATTTAGGATTTCTTTAACATTCTTTCTCATCATAGTCATAACTATGAGGATACAGGCAGTATTTTTATAGCATCCTTTGTCTAGCAGTGTTTCATAGATGTGTTTACACGTATTGAACGCAAGAAAACTTGTATTCCTAGTATTTGTGTTCCAACTAAACAAAAAAAGATACTTCTTTTGCTATGCAGATTGTCAGCCACTGGCAGTGGTTCCCCAGAGTAGTTGTGGTACCTCCATCACTGGAAATGTTCAAAATCCAAATGGAAAGTCCTGTAAAACTTGCTGTCAGTGACCTAGCCTGGAGGGGGTAAACTGAATGGACTGGGTGATCCTAAGAGTTCCTTTCAAATCTAAACAATTCTGTGATTTTCAGATACATTTTTCTTTCAAAATAGAATAATGAACATAATTCTGAACTTTTTTTTTTTCCTCAAAACTGCCTTTGATTGTTGGTAATGGATGAGGTGGAAAGAGGTAGTTTTCCTTTTCACATAACAAAGATCTGGTCTTTGGATTGTTGCTGTTCTCAGAGTATCCGTCTTATGCACATAGATGCATTATTGTACTTAAGAAGGCTGTTTGGCACGCAGTTTTATCAAAACATGCTCCTCATCTTTGGTCAAAGAAATTGGTTTGTTGACAAAGAGGGTACATTGTAAATTCATTTTCCTCAATCAGCTTTTCCTTGGATGGGTGAGTTGGGTTCTACTGATAATTGTAGTATAGTGCTTTAGACAGGTAACATTTTCAAAGGTGAGACTATGTATGAGAAAACAAGTAAATCTGATTTATTTGTTTTTTTTGTTTTTTCTGTTTTGTTTTCCAACTGCCCCTTTTTATGGGCAGGCCCTTGCAAATAAGGAAAATATGAGAACATAGAGTCAAAAAAATAGATCTTCACCTTAAATGTTTTTCCGAGATTGTGTTCCTCTGGTACCTTGTGTTATTTTAAATTATGAATTTTCAGATCCACATGCGATGGGAAATGGGAAGTAATTCTGATCTTAGTACTCTTAAATTTTGCTTTCCTCATCTCTTTTCTTCAG
Seq C2 exon
GGTGATGAAATGAAAAAAACAGGTATTCAACCCATTCCTATGATGGACAGAGACAAGAAAGATGAAGTCCCTCAGGGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011537:ENSGALT00000018810:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.481
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(15.8=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]