DreINT0112202 @ danRer10
Intron Retention
Gene
ENSDARG00000017910 | pdss1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4430]
Coordinates
chr24:5992507-5994224:-
Coord C1 exon
chr24:5994169-5994224
Coord A exon
chr24:5992634-5994168
Coord C2 exon
chr24:5992507-5992633
Length
1535 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TTAACATGTGTGTGTTTCAGGCA
3' ss Score
10.65
Exon sequences
Seq C1 exon
GTTTTATTTCAGCAGGGTCATGTACATAGTTTTAACAAACCAGTGACTCTTTCAAG
Seq A exon
GTATGTTAATGATATGGATTATAACTGTAGGCCTGTCACGATAATCCATTTTTGTTGTGTGATATATTGTCATAAAAACTGTTGCATAAAGCCAAAATTATTGTCATTTTGAGATTTTTTTATGTCACTTATTATATAATGATTATATAACAGCATACTAATGCAAATAGCCATAAACACTTTAATTTTTTTTAATACCTAAGAGGCTAGTATTGATAAATTTTCTATACTTTGTAGAGATGCGCGGATCCGCTGAAATGACACCCGAATCCGCGGCTTCATAATAATCATCCACCCGCCATGCACCCGTGCATATAGTTTTATCTGACTTATGTATCCGCACCCAACCCGTACCCGATCGTCGCTTTAATAATTTAATTCTTTGTTTTAGGCATGATAATAGGTCAATGTGAATATTAATAGCAGACTCGGTGAGCTAATCTGCACATCTCTGATAGTAAAACTTTAGATAACATTTTCTTCATTTTTAAATAGATACAGAAAGTAAAAGTAAGACTTTTTAGCTTTTACAGATACAGGAACAACATAACAGAAAGGGTGCCACTTCAGCCTTAATGGAAACTATGTTGTATTTACTTGGCCTTTTTCTTCACACTGTGCAAAAACAGAACAGCCTTTACTGTGCCTGGATTCAGGTGATTCCGCCTCTCCTCCAAAATGCGGCCAGCTGCACTGAATGAGAGTTCGCTCGCACCGCGTGTTGTAGAACAAGATTCTTCTAGCAAGGCATCATAGTCGTGGAAAAAAGCAATCTTGTTTCTCCCAAAAGGATAGCAGATTTTCCTCTGATGACTCCTCTAACTGAAACTTTGAACAGTAGGCTACTCTTGCTCTTCATCCATTATTTTTGGGCGTCTCATATCTTCCCATTCTGCAAAGCCCACTCTTTGCTTTTTCGCTGGTCCACTGCCATGTCCCGCTACATCCACCCGAAATTAATCATAATGTATTTTTTTATTACCCGACCCACGGATTATCCGCAGCGCCCGTGGATATAACCGCCATCCGCGCATCACTAATACTTTGATATGTATTAATATACTATATTTAACAATGTTGATATTTAAAAAGAAAGAAAAACTGTTTTAATTTCAGTCAAACTAAAAGAAATTAGACTTTCTCTAGACGAAAAAATAGTAGCAAATATTGTGAAAATGTCTTTTCCCTGTTAAACATATTAAAATGTGAAATTCATGGAATTGCTATTACAGTGAACTATTGTTAAATGACTATTGACTACTTTTACACACATTCTCCCACAACATCTCAAAGCTCTGAAGGAACATTTATCAACCTAATTGAACCTAGTTAAACTATACCAGGTTAACTAGTAATTCTGAAAATTTTTGTTGGGGTTAAATTGACTCACAACATAATATAGTCAACCAGCTTTGACATACATCTATTTATCCAGACATGCTTATTTGTATTTAGTTTTCTTACACATTTGTTAATGTACGTTGTTCTTAATCAGAATGGGTTTGTTTAATTGTCTTAACATGTGTGTGTTTCAG
Seq C2 exon
GCACAGGTGTAAATATCTGTACTCAACGCCCCGAGTCAGCTGCAGTTTACACAGTGATGCAAAGTTAAAAGATCCTTTCTCACTCGTACAAAAGGACTTGCAAAATATATATGATGACATAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017910:ENSDART00000040865:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]