GgaINT0098072 @ galGal4
Intron Retention
Gene
ENSGALG00000007559 | PDSS1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:HGNC Symbol;Acc:HGNC:17759]
Coordinates
chr2:15997839-15998912:-
Coord C1 exon
chr2:15998848-15998912
Coord A exon
chr2:15997963-15998847
Coord C2 exon
chr2:15997839-15997962
Length
885 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
TTGAAAAACACTGTCACCAGGTT
3' ss Score
3.33
Exon sequences
Seq C1 exon
ATGTGTCACTTTCCCCAAAGAAGCTCAGTATGGCCATTTCCAAAACTGTGTAGTATACCTTGGCG
Seq A exon
GTAAGTTGGAGGCCCTCATTCCGTGATGGGTAAAGACAGTTACTGGGTGAGCTGTGTAGTCACCGTGAGCTGTAAGCGTAGACTGAAAGTGAGGTTATTTGCTACAGAACATTGGGTAATTCCACATAGACCACCACTGTGCTGTTGGTCTGAGTCCTCCATGCAGGAGGGCAATGGGCAAAGCTCATTTCAGATCGTGAAATTCATTTTGAAGAAATGAGACACACTGAGAACCGTAACCTTCAGCTCCGGGGAATATAAAGAAGTAATGAGGCCCAGGCAGAATGCACCTCGATGCGTGCAGGTAGAACTTTGACCCTTATCGCCGCATGGGATCATGACGCTAACTGGAAGTATGGATTTAATGTATAACTTAGGTTGGGCCGTCTCATGTAGCTGGGTGCGTAAGGGGGATTTTCAAACCCAAGCCAGGAGCATTTGTCTAGGAGTGGGAAGAAATCGGCAGAATAATTGTGCTGCTAGAAGATGAAGGCTTCATCTACAAGTATACACTGTACTGTACAATGTGTTCAAAAGGAATAAGCTGAGAGCAGCGTAGTTTGCTACCCAGGAGAATTCTGTAATCTGTTAAGTGCATGAGTGCGTGCGGAGGATGATGATTATTGCTTTCCAAATGCTGCACTTTGCTAGCTCCTCAAAGTCTACAATCATCAACAAGTAGCTTTGCTGTCCTTCTTCCTCATTAGTTGGTTAAAATGAGTATTTTGATGCCCTGTGTTTATCTTCTAGCTATTTCACTAATTTATTTCGGGGGGCTGGGGGGAGAAAGGAAGGAGGAGGCTGTGCTTTGAAAGGTTTCTCTTTGTAGAATCAAGGGAAGTTGGCTTTTAACAATGTTACTCCTTTGAAAAACACTGTCACCAG
Seq C2 exon
GTTCCATCATACAAGTACAGCCCTCATGTGCAGCTGCAGTAAGACAGTTAGTGATGAAAAATACCAAGACCCTTTTCAACTTGGCAGAAAAGACTTGAAGAATCTCTATGAGGATATTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007559:ENSGALT00000012224:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]